View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_1 (Length: 684)
Name: NF11879_low_1
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 190 - 671
Target Start/End: Original strand, 16814226 - 16814706
Alignment:
| Q |
190 |
ctttgtcagaacatgtactttggtcttttgtttggttggtcaaactagtatgggtcaggttcttgcaactctgcgccgtcgtcagcagagacatcttgtt |
289 |
Q |
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| T |
16814226 |
ctttgtcagaacatgtactttggtcttttgtttggttggtcaaactagtatgggtcaggttcttacaactgtgcaccgtcgtcagcagatacatcttgtt |
16814325 |
T |
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| Q |
290 |
tgattgttgttctttaacaacggtttgatctcttttctgatgaccatttgtttcccgttccgaaatggcaaaccgttgttacaacatcgtctatggcggc |
389 |
Q |
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| T |
16814326 |
tgattgttgttcttgaacaacggtt-gatctcttttctgatgagcattttttccccgttctgaaatggcaaaccgttgttacaacatcgtctatggcggc |
16814424 |
T |
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| Q |
390 |
ggttgtccaaggttgtcttataaacccgatgttgctccccatcctcaacatcagggtcggttctttctctgaaggcatagtccagaatctgcctcttctt |
489 |
Q |
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| T |
16814425 |
ggtcgtccacagttgtcttataaacccgttgttgctctccatcctcaacatcagggtcggttctttctctgaaggcatagtccagaatctgccttttctt |
16814524 |
T |
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| Q |
490 |
ggtggaggatgctggtttctgtggattaaaacattggttgttataggccgtaaaatgttattctattcgccgatgtatgtgttcgaatacccttttacag |
589 |
Q |
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| T |
16814525 |
ggtggtggatgctggtttctgttgatcaaaacattggttgttataggctgtaaaatgttgttctattccccgatgtatgtgttcgaatacccttttacag |
16814624 |
T |
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| Q |
590 |
gtttgatttctcaaaatatgcgtttcacgcatggttatgctcccccaagatcatcgttagtgtggttgttattgtctgtgct |
671 |
Q |
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| T |
16814625 |
gtttgatttctcaaaatatgcgtttcacgcatggttctgttcccccaagatcattgttagtgtggttgttagtgtatgtgct |
16814706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16814157 - 16814229
Alignment:
| Q |
1 |
ttcgatctgagatgatatatgtatactcaatttttaaaaaatatgtatacttaacatgcacatttttaccttt |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16814157 |
ttcgatctgagatgatatatgtatactcaatttttaaaaaatatgtatacttaacatgcacatttttaccttt |
16814229 |
T |
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