View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_10 (Length: 283)
Name: NF11879_low_10
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_10 |
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| [»] scaffold1686 (1 HSPs) |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: scaffold1686 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold1686
Description:
Target: scaffold1686; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 697 - 946
Alignment:
| Q |
17 |
attgaatgtggttgggcacataattaggatgatacatatttaatgttgctgagtttcgttaaatataatgcttctttaaaacttattattacttgatttg |
116 |
Q |
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| T |
697 |
attgaatgtggttaggcacataattaggatgatacatatttaatgttgctgagtttcgttaaatataatgcttctttaaaacttattattacttgatttg |
796 |
T |
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| Q |
117 |
gattcatttaaggttattcatggattttcctttcttgtaattggcatatgtggtctgttaactacttttatagatatgtgcacaagaaatttgaaaagga |
216 |
Q |
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| T |
797 |
gattcatttaaggttattcatggattttcctttcttgtgatcggcatatgtggtctgttaactacttttatagatatgtgcacaagaaatttgaaaagga |
896 |
T |
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| Q |
217 |
atataaaggtacaatcggtgccgatttcttcacaaaagaattgaagattg |
266 |
Q |
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| T |
897 |
atataaaggtacaatcggtgccgatttcttcacaaaagaattgaagattg |
946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1452 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 964 - 709
Alignment:
| Q |
17 |
attgaatgtggttgggcacataattaggatgatacatatttaatgttgctgagtttcgttaaatataatgcttctttaaaacttattattacttgatttg |
116 |
Q |
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| T |
964 |
attgaatgtggttgggcacataattagggtgatacacatttaattttgctgagtttctttaaatattacgcttctgtaaaacttatgattatttgattta |
865 |
T |
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| Q |
117 |
gattcatttaaggttattcatgga--ttttcctttcttgta-attggcatatgtggtctgttaactacttttatagatatgtgcacaagaaatttgaaaa |
213 |
Q |
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| T |
864 |
gatcgatttaaggttattcaaggactattttatttttcgaatatcggcatatgtgggccattaactacttgtatagatatgtgcacaagaagttcagtca |
765 |
T |
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| Q |
214 |
ggaatataaaggtacaatcggtgccgatttcttcacaaaagaattgaagattgatg |
269 |
Q |
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| T |
764 |
gcaatataaagctacaatcggtgctgactttgtcaccaaagaattgcagatcgatg |
709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 14294195 - 14294039
Alignment:
| Q |
38 |
aattaggatgatacatatttaatgttgctgagtttcgttaaatataatgcttctttaaaacttattattacttgatttggattcatttaaggttattcat |
137 |
Q |
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| T |
14294195 |
aattaggttgatacacattttatattgttgagtgtctttaaatttgatgcttctttaaaacttatgattatttgatttagatgaagttatgtttattcaa |
14294096 |
T |
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| Q |
138 |
ggattttcctttcttgtaattggcatatgtggtctgttaactacttttatagatatg |
194 |
Q |
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| T |
14294095 |
gaacattcctttcttgaaattggtagatgtgggccattaactacttgtatagatatg |
14294039 |
T |
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