View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_12 (Length: 258)
Name: NF11879_low_12
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_12 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 39946274 - 39946518
Alignment:
| Q |
1 |
ttgatggataaatctggacaggagtgattgggaaaatagctcgctattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaaggcga |
100 |
Q |
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| T |
39946274 |
ttgatggataaatctggacaggagtgattgggaaaatagctcgctattaagtttttatattgagtctaacccggccttacaaaaccgactcgtaaggcga |
39946373 |
T |
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| Q |
101 |
cattgccactctttctaaactcttctcaggttttgtctgttttcaatgtaggactttggttttccccattacttactaggcccatggttaaccatacatg |
200 |
Q |
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| T |
39946374 |
cattgccactctttctaaactcttctcaggttttgtctgttttcaatgtaggactttggttttccccattacttactaggcccatggttaaccatacatg |
39946473 |
T |
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| Q |
201 |
atacatgtttatcaacaaagccagggtattgttacaggtgatgtc |
245 |
Q |
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| T |
39946474 |
atacatgtttatcaacaaagccagggtattgttacaggtgatgtc |
39946518 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 28496489 - 28496541
Alignment:
| Q |
45 |
tattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaagg |
97 |
Q |
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| T |
28496489 |
tattaggtttttatattgagcctaactcatccttacaaaaccggcttgtaagg |
28496541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 46332531 - 46332565
Alignment:
| Q |
53 |
ttttatattgagcctaactcggccttacaaaaccg |
87 |
Q |
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| T |
46332531 |
ttttatattgagcctaactcgtccttacaaaaccg |
46332565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 34250343 - 34250388
Alignment:
| Q |
52 |
tttttatattgagcctaactcggccttacaaaaccgactcgtaagg |
97 |
Q |
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| T |
34250343 |
tttttatattgggcctaactcatccttacaaaaccgacttgtaagg |
34250388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 48505122 - 48505070
Alignment:
| Q |
45 |
tattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaagg |
97 |
Q |
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| T |
48505122 |
tattaagtttttatattgggtctaactcatccttacaaaaccggctagtaagg |
48505070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 31789470 - 31789389
Alignment:
| Q |
44 |
ctattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaaggcgaca-ttgccactctttctaaactctt |
124 |
Q |
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| T |
31789470 |
ctattaggtttttatattgggcctaattcatccttacaaaaccggcttgtaaggtgagaggtgccactctttataaactctt |
31789389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 51693 - 51637
Alignment:
| Q |
44 |
ctattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaaggcga |
100 |
Q |
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| T |
51693 |
ctattaagtttttatattaggcctaactcatccttacaaaaccggtttgtaaggcga |
51637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 33145650 - 33145702
Alignment:
| Q |
45 |
tattaagtttttatattgagcctaactcggccttacaaaaccgactcgtaagg |
97 |
Q |
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| T |
33145650 |
tattaggtttttatattgagcctaactcattcttacaaaaccggcttgtaagg |
33145702 |
T |
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