View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_14 (Length: 249)
Name: NF11879_low_14
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 4969808 - 4969581
Alignment:
| Q |
16 |
tgaagtcgtacgttaatgttacgtttgagctcaattgcatgtatgtggctattaaatctttatttgatggtagtatagtcacttgtcatgtgttattctt |
115 |
Q |
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| T |
4969808 |
tgaaggcgtacgttaatgttacgtttgagctcaattgcatgtatgtggctattaaatctttatttgatggtagtatagtcacttgtcatgtgttattctt |
4969709 |
T |
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| Q |
116 |
ttagtgcaccaaaatcatttacgagtgttgccttaaagaatgccccgattacaataagtgaaacttgtttacttgaccatttttacttatcacgtttgtt |
215 |
Q |
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| T |
4969708 |
ttagtgcaccaaaatcatttacgagtgttgccttgaagaatgccccgattacaataaatgaaacttgtttacttgaccatttttactgatcacgtttgtt |
4969609 |
T |
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| Q |
216 |
catctcatttttcttcattgatgtccat |
243 |
Q |
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| T |
4969608 |
catctcatttttcttcattgaggtccat |
4969581 |
T |
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