View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11879_low_15 (Length: 240)
Name: NF11879_low_15
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 36027679 - 36027510
Alignment:
| Q |
55 |
acaagcaacaataattcaggacatagatgtgtagagtccaaatggagcagaagtgagcaccaagaaaactgtcacttctgtaacgatggactagttaatt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027679 |
acaagcaacaataattcaggacatagatgtgtagagtccaaatggagcagaagtgagcaccaagaaaactgtcacttctgtaacgatggactagttaatt |
36027580 |
T |
|
| Q |
155 |
tttcagacatgtaactgtatcaaaccatcgtgtgtggaggacacatgactaatgtctggaggcaataact |
224 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027579 |
ttccagacatgtaactgtatcaaaccatcgtgtgtggaggacacatgactaatgtctggaggcaataact |
36027510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36027716 - 36027679
Alignment:
| Q |
1 |
cctgactaacgtctggagacagaaacagtataaaacaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36027716 |
cctgactaacgtctggagacagaaacagtataaaacaa |
36027679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 16931570 - 16931747
Alignment:
| Q |
45 |
acttgtaatgacaagcaacaataattcaggacatagatgtgtagagtccaaatggagcagaagtgagcaccaagaaaactgtcacttctgtaacgatgga |
144 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16931570 |
acttgtaatgacaagctgacataattcaggacatagatgtg--gagtccaaatggagcagaagtgagcaccaagaaaactgtcacttctgtaacgatgga |
16931667 |
T |
|
| Q |
145 |
ctagttaatttttcagacatgtaactgtatcaaaccatcgtgtgtggaggacacatgactaatgtctggaggcaataact |
224 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16931668 |
ctcattagttttccagacatgtaactgtatcaaaccattgtatggggaggacacatgactaatgtctggaggcaataact |
16931747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 16931441 - 16931487
Alignment:
| Q |
132 |
ctgtaacgatggact-agttaatttttcagacatgtaactgtatcaa |
177 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
16931441 |
ctgtaacgatggactcagttaattttccagacatgtaacggtatcaa |
16931487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8879482 - 8879375
Alignment:
| Q |
1 |
cctgactaacgtctggagacagaaacagtataaaacaatttttgacttgtaatgacaagcaacaataattcaggacatagatgtgtagagtccaaatgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8879482 |
cctgactaacgtctggagacagaaacagtataaaacaatttttgacttgtaatgacaagcaacaataattcaggacatagatgtgtagagtacaaatgga |
8879383 |
T |
|
| Q |
101 |
gcagaagt |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
8879382 |
gcagaagt |
8879375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University