View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11879_low_2 (Length: 629)

Name: NF11879_low_2
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11879_low_2
NF11879_low_2
[»] chr4 (4 HSPs)
chr4 (163-609)||(3634836-3635282)
chr4 (1-109)||(3635338-3635446)
chr4 (1-108)||(3644771-3644878)
chr4 (496-539)||(7214530-7214573)
[»] scaffold0067 (1 HSPs)
scaffold0067 (291-342)||(25590-25641)
[»] chr1 (3 HSPs)
chr1 (496-535)||(41017416-41017455)
chr1 (496-558)||(6427358-6427420)
chr1 (494-534)||(40747786-40747826)
[»] chr6 (2 HSPs)
chr6 (492-530)||(13211298-13211336)
chr6 (496-549)||(9195752-9195805)
[»] chr8 (1 HSPs)
chr8 (495-536)||(34201057-34201098)
[»] chr5 (3 HSPs)
chr5 (494-543)||(38749567-38749616)
chr5 (496-568)||(3751909-3751981)
chr5 (494-534)||(18919035-18919075)
[»] chr3 (1 HSPs)
chr3 (496-532)||(28576724-28576760)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 163 - 609
Target Start/End: Complemental strand, 3635282 - 3634836
Alignment:
Q  163 gacccatttggtccctcaaaattttcttgtagtccaatttagtcacgacacaaaataatacacaaactagtttctgatattttcatactggaagaaatta 262  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635282 gacccatttggtccctcaaaatttgctcgtagtccaatttagtcacgacacaaaataatacacaaactagtttctgatattttcatactggaagaaatta 3635183  T
Q  263 attcctgttacactgagtcggggactactaatttctcatttgtataacaatatcatagactaatttgagtattattttttgtcaggactaaattggactg 362  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3635182 attcctgttacactgagtctgggactactaatttctcatttgtataacaatatcatagactaatttgagtattattttttgtcaggattaaattggactg 3635083  T
Q  363 caagctaacaaattgtgtcttcactgcttattaaattgatactacaataatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatac 462  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635082 caagctaacaaattgtgtcttcactacttattaaattgatactacaataatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatac 3634983  T
Q  463 ggacccaacatgacacaaacatgtaaacgttgataataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaaca 562  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3634982 ggacccgacatgacacaaacatgtaaacgttgataataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaaca 3634883  T
Q  563 ccacaccaacatgtggctgacaccataacatacctgatgtttgtgct 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3634882 ccacaccaacatgtggctgacaccataacatacctgatgtttgtgct 3634836  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3635446 - 3635338
Alignment:
Q  1 aatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagagaattcccaca 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635446 aatgcaatggaagcagattcaacagccccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagagaattcccaca 3635347  T
Q  101 ttctgcaac 109  Q
    |||||||||    
T  3635346 ttctgcaac 3635338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3644878 - 3644771
Alignment:
Q  1 aatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagagaattcccaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3644878 aatgcaatggaagcagattcaacagcaccatatattgctgcatagagcagtgagtctggccaaatactgatcatatataaaccaacagaaaattcccaca 3644779  T
Q  101 ttctgcaa 108  Q
    ||||||||    
T  3644778 ttctgcaa 3644771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 7214573 - 7214530
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaattatatgcgt 539  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||    
T  7214573 taataatttgagaaaatcacataatttaatgtaattatatgcgt 7214530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 25641 - 25590
Alignment:
Q  291 taatttctcatttgtataacaatatcatagactaatttgagtattatttttt 342  Q
    |||||| |||||| |||||  |||||| ||||||||||||||||||||||||    
T  25641 taatttgtcatttatataaagatatcacagactaatttgagtattatttttt 25590  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 535
Target Start/End: Complemental strand, 41017455 - 41017416
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaattatat 535  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  41017455 taataatttgagaaaatgacataatttaatgtaattatat 41017416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 558
Target Start/End: Original strand, 6427358 - 6427420
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttg 558  Q
    ||||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||| ||||    
T  6427358 taataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttg 6427420  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 40747826 - 40747786
Alignment:
Q  494 gataataatttgagaaaatgacaaaatttaatctaattata 534  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaattata 40747786  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 530
Target Start/End: Complemental strand, 13211336 - 13211298
Alignment:
Q  492 ttgataataatttgagaaaatgacaaaatttaatctaat 530  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  13211336 ttgataataatttgagaaaatgacataatttaatataat 13211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 9195805 - 9195752
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtg 549  Q
    ||||||||||||||||||||| |||||| | |||||||||| || ||| |||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtg 9195752  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 536
Target Start/End: Complemental strand, 34201098 - 34201057
Alignment:
Q  495 ataataatttgagaaaatgacaaaatttaatctaattatatg 536  Q
    |||||||||||||||||||||| |||| ||| ||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaattatatg 34201057  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 543
Target Start/End: Complemental strand, 38749616 - 38749567
Alignment:
Q  494 gataataatttgagaaaatgacaaaatttaatctaattatatgcgttggt 543  Q
    ||||||||||||| ||||||||| |||| ||| |||||||||| ||||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattatatgtgttggt 38749567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 3751981 - 3751909
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaacaccacac 568  Q
    ||||||||||||||||| ||| || | | | |||||||||| ||| || ||||| ||||||||||||| ||||    
T  3751981 taataatttgagaaaatcacataactaagtataattatatgtgttagtatcgtgtcagtgttgaacacgacac 3751909  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 18919075 - 18919035
Alignment:
Q  494 gataataatttgagaaaatgacaaaatttaatctaattata 534  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  18919075 gataataatttgagaaaatgacataatttaagttaattata 18919035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 28576724 - 28576760
Alignment:
Q  496 taataatttgagaaaatgacaaaatttaatctaatta 532  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  28576724 taataatttgagaaaatgacaaaattgaatgtaatta 28576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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