View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_3 (Length: 586)
Name: NF11879_low_3
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Complemental strand, 13560638 - 13560081
Alignment:
| Q |
11 |
caaaggtatatctagattatttgtcataggtaaaggctcattttttccacgagaagagctacggaaacaaaacctaaatttgtgcatgataagcgttgtg |
110 |
Q |
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| T |
13560638 |
caaaggtatatctagattatttgtcataggtaaaggctcattttctccacgagaagagttacggaaacaaaacctaaatttgtgcatgataagcgttgtg |
13560539 |
T |
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| Q |
111 |
caaatagctattttgaatctctcnnnnnnntagctattatgaactcacctaagagattaggaagttgtaattagaaaagaggattttgagttaagaaagt |
210 |
Q |
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| T |
13560538 |
caaatagctattttgaatctctcaaaaaaatagctattatgaactcacctaagagattaggaagttgtaattagaaaatagggttttgagtcaagaaagt |
13560439 |
T |
|
| Q |
211 |
gatcagatttaattatttaatttattgtgatactaggaaaataattgtaaagattagatgcaattaccaaacgacgagacataaagaatccgaaagaatt |
310 |
Q |
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| T |
13560438 |
aatcaaatttaattatttaatttatcgtgatactagaaaaataattgtaaagattaggtgcaattaccaaacgacgagacataaagaattcgaaagactt |
13560339 |
T |
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| Q |
311 |
tatcatatttcctttgaaatctttaccaagtttatttacattttattaagtaaatttataattgttacactgaaatatacctcgtgcataccgccttgtt |
410 |
Q |
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| T |
13560338 |
gatcatatttcctttgaaatctttaccaagtttatttacattttattaagtaaatttataattgttacactgaaatatacctcgtgcataccgccctgtt |
13560239 |
T |
|
| Q |
411 |
tacatccttattgacaactttattaccttgacatatttttagtttacttgctaacagtccatcatgtttttagtgtttatgttggggatcgttaaaaaat |
510 |
Q |
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| T |
13560238 |
tacatccttattgacaactttattactttgacatatttttagtttacctgctaacagtccatcatgtttttagtgtttatgttggggatcgttaaaaaat |
13560139 |
T |
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| Q |
511 |
ttcaaccaggatatgtgtaattcttatttagaattttagttactaaattcctgccaaatt |
570 |
Q |
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| T |
13560138 |
ttcaaccaggaaa--tgtaattcttatttagaattttagttactaaattcctgccaaatt |
13560081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 33650328 - 33650267
Alignment:
| Q |
56 |
tccacgagaagagctacggaaacaaaacctaaatttgtgcatgataagcgttgtgcaaatag |
117 |
Q |
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| T |
33650328 |
tccacgagaagagctaccgagacctggcctaaatatgtgcatggtaagcgttgtgcaaatag |
33650267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 276
Target Start/End: Complemental strand, 2733783 - 2733658
Alignment:
| Q |
151 |
gaactcacctaagagattaggaagttgtaattagaaaagaggattttgagttaagaaagtgatcagatttaattatttaatttattgtgatactaggaaa |
250 |
Q |
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||||||||||||||||||| | ||||||||| ||| ||||| |||||||| |||| | ||||| || | | || ||||||||| || ||||||| |
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| T |
2733783 |
gaactcacctaagagattaaggagttgtaatcagataagagagttttgagtcaagagattgatctgaatcattttgttaatttatcgtaatactagacgc |
2733684 |
T |
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| Q |
251 |
ataattgtaaagattagatgcaatta |
276 |
Q |
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| T |
2733683 |
ataattgtaaaaatcagacgcaatta |
2733658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 44107704 - 44107656
Alignment:
| Q |
158 |
cctaagagattaggaagttgtaattagaaaagaggattttgagttaaga |
206 |
Q |
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| T |
44107704 |
cctaagagattaggaagtcgtaattagtgaagagggttatgagttaaga |
44107656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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