View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_4 (Length: 581)
Name: NF11879_low_4
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Original strand, 37493522 - 37494076
Alignment:
| Q |
13 |
tcatcaagatccctttttgtaagaatgtattatgcaatgattattactattcttgaaacaggaaaggaaaattgtacccaactaaaatcttgatttgaaa |
112 |
Q |
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| T |
37493522 |
tcatcaagatccctttttataagagtgtattatgcaatgattattactattcttgaaacaggaaaggaaaattgtacccaactaaaatcttgatttgaaa |
37493621 |
T |
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| Q |
113 |
catgaagagtccaataaaaaatttagaagtaaaaagtaatcaagtgctagggaggtacaactgtaatattgatgtgtctttcttggcacaaagaaatcat |
212 |
Q |
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| T |
37493622 |
catgaagagtccaataaaaaatttagaagtaaaaagtaatcaagtgctagggaggtacaactgtaatattgatgtgtctttcttggcacaaagaaatcat |
37493721 |
T |
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| Q |
213 |
actcgaattgatatgtgcattggtgatgatgatgaaggcatgtttgttcttgctatgcaatgtggatgtgaggaaagctctgagcctacttcatgcactc |
312 |
Q |
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| T |
37493722 |
actcgaattgatatgtgcattgatgatgatgatgaaggcatgtttgttcttgctatgcaatgtggatgtgagggaagctctgagcctacttcatgcactc |
37493821 |
T |
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| Q |
313 |
tcatggattcatgacttacgatgaccgcgttgttaattttgtttttgatttgaaaaagatgattgactattttaacaaatggaagcaatgacattactga |
412 |
Q |
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| T |
37493822 |
tcatggattcatgacttacgatgacagcgttgttaattttgtttttgatttgaaaaagatgattgactattttaacaaatggaagcaatgacattactga |
37493921 |
T |
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| Q |
413 |
ttttgattatgtactgtgtgaatttaagcgttgttgtaatttatattttgaaaactcttgtattgaatttagtccatgacaaatcaataaaattgttcat |
512 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37493922 |
ttttgattttgtactgtgtgaatttaagcgttgttgtaatttatattttgaaaactcttgtattgaatttagtccatggcaaatcaataaaattgttcat |
37494021 |
T |
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| Q |
513 |
actttagtaacagtataaccacatccttaacttgttataatacttttagtgatgt |
567 |
Q |
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| T |
37494022 |
actttagtaacagtataaccacatccttaacttgttataatacttttagtgatgt |
37494076 |
T |
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