View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_5 (Length: 454)
Name: NF11879_low_5
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Complemental strand, 15688724 - 15688285
Alignment:
| Q |
10 |
acatcaaaataacaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcatt |
109 |
Q |
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| T |
15688724 |
acatcaaaataacaggatagaagtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcact |
15688625 |
T |
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| Q |
110 |
aaagtatctttcatatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatcg |
209 |
Q |
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| T |
15688624 |
aaagtatctttcatatcatttatagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctgctatcg |
15688525 |
T |
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| Q |
210 |
acgtgcaagggtcatcttacttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagtgtcatttagcc |
309 |
Q |
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| T |
15688524 |
atgtgcaagggtcatcttacttttcttacaggctaaatctcattagccgctcatagtccaatgtttgggctacaataacccacttcagtgtcatttagcc |
15688425 |
T |
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| Q |
310 |
atgctcacagtaataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacata |
409 |
Q |
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| T |
15688424 |
atgctcacagtaataataatgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaacatagacata |
15688325 |
T |
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| Q |
410 |
agttgcaagttcaatcaatagccttctcattacctttgct |
449 |
Q |
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| T |
15688324 |
agttgcaagttcaatcaatagctttctcattacctttgct |
15688285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 399
Target Start/End: Complemental strand, 15696729 - 15696374
Alignment:
| Q |
31 |
agtaagtaaagcacataaataaaccactacacaccagaatccatacatttacgactcaatcttatcatgaatcttcattaaagtatctttcatatcattt |
130 |
Q |
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| T |
15696729 |
agtaagtaaaacacataaataaaccactacacactacaatccacacatcaacgactcaatctt------------cattaaagtatctttaagatcattc |
15696642 |
T |
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| Q |
131 |
atagtgatttaatgcatattaagctaaattttaacaacgaaactagtcaacaatgatgccaaaaatgctcctactatc-gacgtgcaagggtcatcttac |
229 |
Q |
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| T |
15696641 |
ctaacgatgtaattaatgttaaactaaattttgataaggaaactagctat---tgatgccaaaaatgctcttgctacccggcatacaagggtcatcttac |
15696545 |
T |
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| Q |
230 |
ttttcttgcaggctaaatctcattagccgctcagagtccaatatttgggctacaataacccacttcagt--gtcatttagccatgctcacagtaataata |
327 |
Q |
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| T |
15696544 |
tttctgtggagtctaaatctcattagtcggttagagtccaatatttgggctagaataacccactttagtcggtcagagtccaatattta-ggcaataata |
15696446 |
T |
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| Q |
328 |
atgatacttttcatctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataaa |
399 |
Q |
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| T |
15696445 |
atgataattttcttataaaagatgggaccaaccatcaaccttgtgcatccatacataagataatggcataaa |
15696374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 24759630 - 24759687
Alignment:
| Q |
341 |
tctaaaagatgggatcaaccatcaaccttgtgcacctatacacaatatagtggcataa |
398 |
Q |
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| T |
24759630 |
tctaaaagatgggaccaataatcaaccttgtgcatccatacacaagatagttgcataa |
24759687 |
T |
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