View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11879_low_7 (Length: 406)
Name: NF11879_low_7
Description: NF11879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11879_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 48965752 - 48965361
Alignment:
| Q |
15 |
acatcatatgtagtgaatcagaaaatgtagaaaggtcagatcacatgtgtggtgtgttccctcggatggtgaccgtagcttaaggatagattactttggt |
114 |
Q |
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| T |
48965752 |
acatcatatgtagttaatcagaaaatgtagaaaggtcagatcacatgtgtggtttgttccctcggatggtgaccgtagcttaaggatatattactatggt |
48965653 |
T |
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| Q |
115 |
ttggaagatgaaactgaccttaggaacttagttgaggaagctggtggttctttgattcaaattatctttttggccaatcgtccgtttattatcaattgtg |
214 |
Q |
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| T |
48965652 |
ttggaagatgaaactgaccttaggaacttagttgaggaagctggtggttctttgattcaaattatctttttggccaatcgtcggtttattatcaattgtg |
48965553 |
T |
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| Q |
215 |
ccatatctataacaattaacagaagaaggccctagacaacaaactcattctgtttagcacgatgtgtaagataatgaataatctttataacattcatttc |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965552 |
ccatatctataacaatgaacagaagaaggccctagacaacaaactcattctgtttagcacgatgtgtaagataatgaataatctttataacattcatttc |
48965453 |
T |
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| Q |
315 |
aaaatatgagatgttaaatcaattgagtctaaatgaacagctagtatggttgtttagcaagacatcatagtacatcaagagccctgcattgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965452 |
aaaatatgagatgttaaatcaattgagtctaaatgaacagctagtatggttgtttagcaagacatcatagtacatcaagagccctgcattgt |
48965361 |
T |
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