View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_high_15 (Length: 465)
Name: NF11880_high_15
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 4 - 449
Target Start/End: Complemental strand, 48454838 - 48454397
Alignment:
| Q |
4 |
ggagaagcaaaggagtagattgataaagaggttgattgtttcatatcccgccgaaacataaaactaacgatactaatctttgttgttttaaaataagatg |
103 |
Q |
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| T |
48454838 |
ggagatgctaaggagtagattgataaagaggttgattgtttgatatcccaccgaaacataaaactaacgatactaatctttgttgtttcaaaataagatg |
48454739 |
T |
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| Q |
104 |
ttcggatcannnnnnnnnnnnnnnnngtgtacatatataaataaatttgagaattgatgatatgttacaccataagttggaaatattagtttttaggtat |
203 |
Q |
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| T |
48454738 |
ttcggatcaaattttttttttt----gtgtacatatataaataaatttgagaattgatgatatgttacaccataagttggaaatattagtttttaggtat |
48454643 |
T |
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| Q |
204 |
aattgattgatttgtctaaccaatcgtgattttgaatggtacaaatatagtatacataggatatagataaggcatgaaatgagtttacaaagagtcgcac |
303 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48454642 |
aattgattgatttgtctaaccaattgtgattttgaatggtacaaacatagtatacataggatatagataaggcatgaaatgagtttacaaagaatcgcac |
48454543 |
T |
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| Q |
304 |
tcatcgtcttataaatcaactttgtaaggataagttaaacctaactaatattaaaaacttaaaatatggtttctaagcttatcggtatggttcttatgac |
403 |
Q |
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| T |
48454542 |
tcatcgtcttataaatcaactttataaggataagttaaacctaactaatattaaaaacttaaaatatggtttctaagcttatcggtatggttcttatgac |
48454443 |
T |
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| Q |
404 |
ttcttgatattgattgtctaacataaagaaatagctgtcacttttt |
449 |
Q |
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| T |
48454442 |
ttcttgatattgattgtctaacataaagaaatagctgtcacttttt |
48454397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 28767050 - 28767091
Alignment:
| Q |
262 |
ggatatagataaggcatgaaatgagtttacaaagagtcgcac |
303 |
Q |
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| T |
28767050 |
ggatatagataaggcctgaaatgagtttataaagagtggcac |
28767091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 43295454 - 43295502
Alignment:
| Q |
257 |
acataggatatagataaggcatgaaatgagtttacaaagagtcgcactc |
305 |
Q |
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| T |
43295454 |
acataggttaaagataaggcctgaaatgagtttataaagagtggcactc |
43295502 |
T |
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