View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_high_16 (Length: 463)

Name: NF11880_high_16
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_high_16
NF11880_high_16
[»] chr2 (21 HSPs)
chr2 (19-463)||(39493142-39493582)
chr2 (19-276)||(39144635-39144892)
chr2 (21-256)||(39425439-39425674)
chr2 (19-257)||(39188659-39188897)
chr2 (22-171)||(39604358-39604507)
chr2 (22-232)||(39380424-39380634)
chr2 (22-195)||(39099629-39099802)
chr2 (28-228)||(2362727-2362927)
chr2 (22-232)||(39216699-39216909)
chr2 (22-232)||(39396582-39396792)
chr2 (22-231)||(39371159-39371368)
chr2 (22-232)||(39153101-39153311)
chr2 (22-232)||(39472694-39472904)
chr2 (22-117)||(39126528-39126623)
chr2 (30-216)||(39196456-39196642)
chr2 (22-232)||(44895037-44895247)
chr2 (21-69)||(39138687-39138735)
chr2 (22-132)||(39387524-39387634)
chr2 (30-67)||(39413124-39413161)
chr2 (97-133)||(31606536-31606572)
chr2 (22-66)||(39421279-39421323)
[»] chr4 (1 HSPs)
chr4 (97-195)||(33152229-33152327)
[»] chr3 (1 HSPs)
chr3 (19-216)||(51576024-51576221)
[»] chr7 (1 HSPs)
chr7 (22-69)||(19808945-19808992)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 39493582 - 39493142
Alignment:
Q  19 tcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493582 tcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcctt 39493483  T
Q  119 ctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgggg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493482 ctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgggg 39493383  T
Q  219 ccatgggttttgcagaaaaaatatcaggcaagatatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaat 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493382 ccatgggttttgcagataaaatatcaggcaagatatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaat 39493283  T
Q  319 tgaactgatatgttggcttcatacacttgatgcaaaatttaacatgttggttaattatttgaaaataaaatacacatattttgaataatttattgaagta 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||| ||||     
T  39493282 tgaactgatatgttggcttcatacacttgatgcaaaatttaacatgttggttaattcttggaaaataaaatacacaaattttgaacaatttattcaagtg 39493183  T
Q  419 tatttcatcttttgtttcctagagcttattgtatagctgttttgg 463  Q
    || ||    ||||||||||||||||||||||||||||||||||||    
T  39493182 tactt----ttttgtttcctagagcttattgtatagctgttttgg 39493142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 39144635 - 39144892
Alignment:
Q  19 tcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcctt 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  39144635 tcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactcctt 39144734  T
Q  119 ctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgggg 218  Q
    |||||||||||||| |||| |||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| |||| | ||| |||||||||||||    
T  39144735 ctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagctttttggacttgtttctcagcacgacatagctgtagagctgtttgggg 39144834  T
Q  219 ccatgggttttgcagaaaaaatatcaggcaagatatctataatttgccttatttttct 276  Q
    || |||| |||||| | |||||||| || ||||||||||  || |||||| |||||||    
T  39144835 ccttgggatttgcaaataaaatatctggtaagatatctaatatctgccttgtttttct 39144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 39425674 - 39425439
Alignment:
Q  21 atgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttct 120  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||  || ||||| ||||||||||| |||||    
T  39425674 atgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacataagtcaaaacaatgaaaattcagcggctgttcttggttttctacttcttct 39425575  T
Q  121 gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc 220  Q
    ||||||||||||||||||||| |||||||| || || || ||||| ||||| || | ||||||||||||||||||| | | ||| |||||||||||||||    
T  39425574 gtcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaacttagctgtagagctgtttggggcc 39425475  T
Q  221 atgggttttgcagaaaaaatatcaggcaagatatct 256  Q
    |||||||||||||| |||||||||||||||||||||    
T  39425474 atgggttttgcagataaaatatcaggcaagatatct 39425439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 39188897 - 39188659
Alignment:
Q  19 tcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcctt 118  Q
    |||||||| ||| || |||||||| |||||||||||| | ||||||||||| |   |||| |  | ||||||  | | |||||| |||||||||||||||    
T  39188897 tcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactcctt 39188798  T
Q  119 ctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgggg 218  Q
    || |||||||||||  ||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||||| || |||| |  || ||||| |||||||    
T  39188797 ctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttggacttgtttctcagtacgacataggcgtagagctatttgggg 39188698  T
Q  219 ccatgggttttgcagaaaaaatatcaggcaagatatcta 257  Q
    || | ||||||||||| |||||||| || ||||||||||    
T  39188697 ccttaggttttgcagataaaatatctggtaagatatcta 39188659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 39604358 - 39604507
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||||||||| |||| || |||||||  || || ||||| ||||||||||||||| ||    
T  39604358 tgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtg 39604457  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagct 171  Q
    |||||||||||| ||| ||| ||||||||||| ||||| |||||||||||    
T  39604458 tcaatttatggattggctccttctttcgatgaagatgaagttttaaagct 39604507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 39380634 - 39380424
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||| |||||||  | || || ||| |||| || |||||||| || |||||||| ||| ||    
T  39380634 tgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttg 39380535  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||||||||||| || || | ||||||||||| |||||  ||||  |||| |||| | | ||| |||||||||| || | | ||||| ||||| |||||     
T  39380534 tcaatttatggattgcttacttctttcgatgaagatgaaattttggagctttttgcattggttgctcagcacaagatagctatggagatgtttcgggccc 39380435  T
Q  222 tgggttttgca 232  Q
    |||||||||||    
T  39380434 tgggttttgca 39380424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 39099629 - 39099802
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| ||||||||| |||||||| |||||| |  ||||| ||   |||||| |||  || |||||||| || |||||||| ||||||||||||||||||    
T  39099629 tgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtgaaactactgaaaattcggtggcggttcttggttttctactccttctg 39099728  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaa 195  Q
    |||||||||  | ||| ||| ||||| ||||| ||||| ||||||||||| |||||  ||| | ||||||||||    
T  39099729 tcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaa 39099802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 2362727 - 2362927
Alignment:
Q  28 agaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatt 127  Q
    ||||||||||||||||||||||||| |  |||||||| ||||  |  |||| || |||||| ||||  | ||||| || ||| | |||||||||||||||    
T  2362727 agaagaagcaatgaagctagcacttaaactgaaagcttacattggcgaaaatactgaaaatccagtgccagttctggggtttttgctccttctgtcaatt 2362826  T
Q  128 tatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggtt 227  Q
    |||||| ||||| | ||||||||||| |||||  |||||||||| |||||  ||| | |||| ||||| ||   ||| |||||||||||| | |||||||    
T  2362827 tatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgtttgggactatgggtt 2362926  T
Q  228 t 228  Q
    |    
T  2362927 t 2362927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 39216699 - 39216909
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| |||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||| ||  |||||||  | | |||||| |||||||| || ||| ||    
T  39216699 tgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttg 39216798  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||||||||||| ||||| | ||||| | ||| ||||| |||||  |||| |||| |  |||| |||||||||| || | | | || ||||||| | ||     
T  39216799 tcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccc 39216898  T
Q  222 tgggttttgca 232  Q
    |||||||||||    
T  39216899 tgggttttgca 39216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 39396792 - 39396582
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| |||||||||| |||||||||||| |||| ||| |||| |||| ||  |||| || ||||||||  | |||||||| |||||| |  | ||| ||    
T  39396792 tgtaagagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttg 39396693  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||||||||||| || || | ||||||||||| ||||| |||||  |||| |||| |   ||| |||||||||| |  | | |||||||||||| | ||     
T  39396692 tcaatttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgctcagcacaagacagctatggagctgtttgagaccc 39396593  T
Q  222 tgggttttgca 232  Q
    |||||||||||    
T  39396592 tgggttttgca 39396582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 39371159 - 39371368
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| ||| |||||| ||||||||||||||||||||||||| ||||| |   |||| |   ||||| |  | | |||||| ||||||||| | ||| ||    
T  39371159 tgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttg 39371258  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||| ||||||| ||||| | ||||| ||||| |||||  ||||  |||| |||| | ||||| || ||||||| || | | |||||||||||||  |||    
T  39371259 tcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgttgctgagcacaagatagctatggagctgtttggaacca 39371358  T
Q  222 tgggttttgc 231  Q
    ||||||||||    
T  39371359 tgggttttgc 39371368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 39153101 - 39153311
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| |||||||||| |||| || |||| |||| |||||||||| ||||   |||| || ||||||||  | | |||||| |||||||||||  || ||    
T  39153101 tgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttg 39153200  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    || ||||||||| ||||| | ||||||||| | ||||| || ||  |||| |||| | ||||| |||| ||||| | || |||||| || ||| || ||     
T  39153201 tcgatttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgctcaacacaagactgctgtggaactatttcggaccc 39153300  T
Q  222 tgggttttgca 232  Q
    |||||||||||    
T  39153301 tgggttttgca 39153311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 39472904 - 39472694
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||||| |||| ||| ||||||| ||||||||| |||||| |||||| |   |||| || ||||||||  | |  ||||| ||||||||||| ||| ||    
T  39472904 tgtaaaaaaagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttg 39472805  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||||||||| | || || | ||||| ||||| ||||| || ||  |||| || | | ||||| |||||||||| || | |||||| |||||| || ||     
T  39472804 tcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctgtggaactgtttcggacct 39472705  T
Q  222 tgggttttgca 232  Q
    |||||||||||    
T  39472704 tgggttttgca 39472694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 39126528 - 39126623
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcct 117  Q
    ||||| ||||||||||||||||||||| ||| |  ||||| ||||||||||| |||| ||   ||||||||  ||| |||| ||||||||||||||    
T  39126528 tgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacataagtgaaaaaacctgaaattcagcggcgattctgggttttctactcct 39126623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 39196642 - 39196456
Alignment:
Q  30 aagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaattta 129  Q
    |||||||| ||||||||||| ||||| ||||||||||||| | | | || || ||||||||  | |||||||| || ||||| || ||| ||||||||||    
T  39196642 aagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaattta 39196543  T
Q  130 tggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgg 216  Q
    |  | || ||   ||||| ||||| ||||| |||||  |||| |||| | ||||| ||| | |||| ||||  ||||||||||||||    
T  39196542 taaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgaacaatattgcggtggagctgtttgg 39196456  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 44895247 - 44895037
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||| |||| ||||| |||||||||||| | |  | |||||||||||||    ||| || ||||||||  | | |||||| ||||||||||| ||| ||    
T  44895247 tgtaagagaacaagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttg 44895148  T
Q  122 tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca 221  Q
    |||||||||||| || || | ||||||||||| |  || |||||  |||| |||| | ||||| |||||||||| || | |||||| || ||| || ||     
T  44895147 tcaatttatggattgattacttctttcgatgaaggcgaagttttggagctttttgcatttgttgctcagcacaagatagctgtggaactttttcggaccc 44895048  T
Q  222 tgggttttgca 232  Q
    | |||||||||    
T  44895047 tcggttttgca 44895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 39138687 - 39138735
Alignment:
Q  21 atgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 69  Q
    |||||| |||||||||| |||||||||||||| || |||||||||||||    
T  39138687 atgtaagagaagaagcattgaagctagcacttaatctgaaagctaacat 39138735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 39387634 - 39387524
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctg 121  Q
    ||||||| |||||||| |||||||||| | |||| | ||||||||||| |   |||| || ||||||||  | || ||||| |||||||| || ||| ||    
T  39387634 tgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttg 39387535  T
Q  122 tcaatttatgg 132  Q
    |||||||||||    
T  39387534 tcaatttatgg 39387524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 39413161 - 39413124
Alignment:
Q  30 aagaagcaatgaagctagcacttgatatgaaagctaac 67  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaac 39413124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 31606572 - 31606536
Alignment:
Q  97 ggttctaggttttctactccttctgtcaatttatgga 133  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31606572 ggttcttggttttctactccttccgtcaatttatgga 31606536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 39421323 - 39421279
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaa 66  Q
    |||||||||||||||| ||||||| || |||||| ||||||||||    
T  39421323 tgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaa 39421279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 33152229 - 33152327
Alignment:
Q  97 ggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaa 195  Q
    |||||| |||||||| || |||||||||||||||||  ||||| ||||||| ||||| ||||| ||||||||||| |||||| | ||| |||| |||||    
T  33152229 ggttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaa 33152327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 51576024 - 51576221
Alignment:
Q  19 tcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactcctt 118  Q
    ||||||| ||||||||||| |||| ||||  ||  || |||||||  |||| ||| |||| || |||||||| || | |||||| |||| ||| ||||||    
T  51576024 tcatgtacaagaagaagcattgaaactagtcctcaatttgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatctgctcctt 51576123  T
Q  119 ctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgg 216  Q
    ||||||||||||||| ||||||| | ||| ||| | |||||  |||| |||   |||||| ||||| |||||||||| || |  || |||||||||||    
T  51576124 ctgtcaatttatggattggttccttattttgataaagatgaaattttgaagtattttggatttgttgctcagcacaaaatagcagtagagctgtttgg 51576221  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 19808945 - 19808992
Alignment:
Q  22 tgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 69  Q
    ||||| ||||||| || ||||||||||||||||| |||||||||||||    
T  19808945 tgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 19808992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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