View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_high_20 (Length: 350)
Name: NF11880_high_20
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 384216 - 383877
Alignment:
| Q |
1 |
ccttcaacccgaatatagattaccatgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctataggttatctttcagtgtgc |
100 |
Q |
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| T |
384216 |
ccttcaacccgaatatagattatcatgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctataggttatctttcagtgtgc |
384117 |
T |
|
| Q |
101 |
ggaccattataatgtttaattaatgtattctagtttgttcatgtctttgtttggctaatgtatgtccttcaagcagcagatagttgcccatgcttcttgt |
200 |
Q |
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| T |
384116 |
ggaccattataatgtttaattaatgtattctagtttgatcatgtctttgtttggctaatgtatgtccttcaagcagcagatagttgcctatgcttcttgt |
384017 |
T |
|
| Q |
201 |
tttatatacgcacttctattggtcggcttccaagcgtgtgaacaatattaaatcatggctttgtttggctaatatatgttcttcaagcagatagttgcct |
300 |
Q |
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| T |
384016 |
tttatatacgcacttctattggttggcttccaagcgtgtgaacaatattaaatcatggctttgtttggctaatatatgttcttcaagcagatagttgcct |
383917 |
T |
|
| Q |
301 |
atatttcttgttttatatatgctcttggattatgcctatg |
340 |
Q |
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| T |
383916 |
atatttcttgttttatatatgctcttggattatgcctatg |
383877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 12534923 - 12534870
Alignment:
| Q |
284 |
caagcagatagttgcctatatttcttgttttatatatgctcttggattatgcct |
337 |
Q |
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| T |
12534923 |
caagcagatagtttcctatgtttcttgttttatatatgctctacgattatgcct |
12534870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 12541148 - 12541204
Alignment:
| Q |
24 |
catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttcta |
80 |
Q |
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|||||||||||||||| ||||||| | || ||||||||||||||| || |||||||| |
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| T |
12541148 |
catgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttcta |
12541204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 28239774 - 28239831
Alignment:
| Q |
24 |
catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctat |
81 |
Q |
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| T |
28239774 |
catgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat |
28239831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 47569735 - 47569791
Alignment:
| Q |
11 |
gaatatagattaccatgctttctagttttctaatttatgcactatgcttctgctttta |
68 |
Q |
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| T |
47569735 |
gaatgtagattac-atgctttctagttttctaatttaaggactatgtttttgctttta |
47569791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 12535075 - 12535019
Alignment:
| Q |
26 |
tgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctata |
82 |
Q |
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| T |
12535075 |
tgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctata |
12535019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 28326888 - 28326936
Alignment:
| Q |
33 |
tagttttctaatttatgcactatgcttctgcttttagttgcacttctat |
81 |
Q |
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|||||| |||||| | | ||||||||| ||||||||||||||||||||| |
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| T |
28326888 |
tagtttgctaattaaaggactatgcttttgcttttagttgcacttctat |
28326936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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