View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_high_25 (Length: 293)
Name: NF11880_high_25
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 3709277 - 3709530
Alignment:
| Q |
19 |
gttgtgactaacatttgattagcaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtgactgggatttgcttaaaaataa |
118 |
Q |
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| T |
3709277 |
gttgtgactaacatttgattaccaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtgaccgggatttgcttaaaaataa |
3709376 |
T |
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| Q |
119 |
ttgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggcaggaaaatcacttccggtggccgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3709377 |
ttgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggcaggaaaatcacttccagtggccgga |
3709476 |
T |
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| Q |
219 |
cggattgtggttgtacaatacattgatctgtaaagtgcttctaggttttgagttctgtg |
277 |
Q |
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| T |
3709477 |
cggattgtggttg-----tacattgatctgtaaagtgcttctaggttttgagttctgtg |
3709530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 3718415 - 3718590
Alignment:
| Q |
19 |
gttgtgactaacattt-gattagcaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtgactgggatttgcttaaaaata |
117 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3718415 |
gttgtgactaacattttgattagcaatggttgaggttaatttatatcagtgcttgagttactgcttattgtgatttgtgactgggatttgcttaaaaata |
3718514 |
T |
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| Q |
118 |
attgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggc |
193 |
Q |
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| T |
3718515 |
attgatgctattctgcatcatcatgtgagtatttttatcatattaattaacataaatttttcttaattccagtggc |
3718590 |
T |
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