View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11880_high_8 (Length: 581)
Name: NF11880_high_8
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 565
Target Start/End: Complemental strand, 13394062 - 13393505
Alignment:
| Q |
8 |
caaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcatccatgtcacctatcatatcaaccccacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13394062 |
caaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcatccatgtcacctatcatatcaaccccacc |
13393963 |
T |
|
| Q |
108 |
aaattacattaaacttcatgaaaatttcatgcacatccttaccctcttggtggtatgtaactactaattgttagnnnnnnnatttaacgaattgaagcga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13393962 |
aaattacattaaacttcatgaaaatttcatgcacatccttaccctcttggtggtatgtaactactaattgttagtttttttatttaacgaattgaagcga |
13393863 |
T |
|
| Q |
208 |
caatgaccggattgaaagtttatcccaatagtattggttgggacgcggaaagagtattaacaaattttcgcttccccctaacaacttaattactaacatt |
307 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13393862 |
catggaccggattgaaagtttatcccaatagtattggttgggacgcggaaagagtattaacaaattttcgcttccccctaacaacttaattactaacatt |
13393763 |
T |
|
| Q |
308 |
tgcatataaaaagacatcgttatnnnnnnnnnttgtacctcggaacgtgtggcttcggctatgagacacaagatgaagcaaagtaagcctaatagaattg |
407 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13393762 |
tgcatataaaaagacatcgttattaaaaaaaattgtacctcggaacgtgtggcttcggctatgagacacaggatgaagcaaagtaagcctaatagaattg |
13393663 |
T |
|
| Q |
408 |
tgaaaaccataagaaaagctcctgttttgctactcaaatctgttttacttctttttggttcaaggtctgcatgtgtaactgccattctctatgacccttc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13393662 |
tgaaaaccataagaaaagctcctgttttgctactcaaatctgttttacttctttttggttcaaggtctgcatgtgtaactgccattctctatgacccttc |
13393563 |
T |
|
| Q |
508 |
aagagagacaattcctaagggagaaaagaagaagagagaatgaaagttttattctaat |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13393562 |
aagagagacaattcctaagggagaaaagaagaagagagaatgaaagttttattctaat |
13393505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 497
Target Start/End: Complemental strand, 13396674 - 13396574
Alignment:
| Q |
391 |
taagcctaatagaattgtgaaaaccataagaaaagctcctgttttgctactcaaatctgttttacttctttttggttcaaggtctgcatgtgtaactgcc |
490 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
13396674 |
taagcctaatataattgtgataac---aagaaaaactactgttttactactcaaatctgttttactt---tttggttcaaggtctgcatgtgtaacagcc |
13396581 |
T |
|
| Q |
491 |
attctct |
497 |
Q |
| |
|
||||||| |
|
|
| T |
13396580 |
attctct |
13396574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 13397169 - 13397038
Alignment:
| Q |
6 |
agcaaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcat---ccatgtcacctatcatatcaacc |
102 |
Q |
| |
|
|||||||| ||||| || |||| |||||| |||||||| ||||| |||||| |||||||||| | ||||||| ||||||||||||| |||||| | |
|
|
| T |
13397169 |
agcaaaggtactttaccgttaccattgtaagcacattcatatttatctcccttatcttttccatctttattcataatccatgtcacctattatatcatca |
13397070 |
T |
|
| Q |
103 |
ccaccaaattacattaaacttcatgaaaattt |
134 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
13397069 |
tcaccaaattatattaaacttcatgaaaattt |
13397038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 552
Target Start/End: Complemental strand, 13396536 - 13396493
Alignment:
| Q |
509 |
agagagacaattcctaagggagaaaagaagaagagagaatgaaa |
552 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
13396536 |
agagagacaatttctaagggagaaaggaagaagagagaatgaaa |
13396493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University