View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_11 (Length: 605)
Name: NF11880_low_11
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 605
Target Start/End: Original strand, 29007114 - 29007702
Alignment:
| Q |
17 |
catcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcattataaatgaccaaacacccacatca |
116 |
Q |
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| T |
29007114 |
catcactcactttggaacaattgactaaagtcactaaaccaaatcacaatctatatgtactaaacaatatgtcattatgaatgaccaaacacccacatca |
29007213 |
T |
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| Q |
117 |
gtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacnnnnnnntaagaccaagcgaaagctcggatgattacgagtgtaatcaa |
216 |
Q |
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| T |
29007214 |
gtgaaataaactgtctagtgtgagctagctagttgatagctgaaaggtgaacaaaaaaagaagaccaagcgaaagctaagatgattacgagtgtaatcaa |
29007313 |
T |
|
| Q |
217 |
tggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgcgcatctggaggactaggaggagaatcactgtgtggtggacta |
316 |
Q |
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| T |
29007314 |
tggaacacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggacta |
29007413 |
T |
|
| Q |
317 |
ggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactt |
416 |
Q |
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| T |
29007414 |
ggaggagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactt |
29007513 |
T |
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| Q |
417 |
tgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgtt |
516 |
Q |
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| T |
29007514 |
tgacttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgtt |
29007613 |
T |
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| Q |
517 |
gtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaaca |
605 |
Q |
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| T |
29007614 |
gtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaaca |
29007702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 335 - 605
Target Start/End: Complemental strand, 21409776 - 21409517
Alignment:
| Q |
335 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
434 |
Q |
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| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
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| Q |
435 |
cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt |
534 |
Q |
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt |
21409588 |
T |
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| Q |
535 |
tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaaca |
605 |
Q |
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| T |
21409587 |
tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaaca |
21409517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 335 - 469
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
335 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
434 |
Q |
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| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
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| Q |
435 |
cttgttgacaatgacccattctgccacaaacgaag |
469 |
Q |
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| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 485 - 604
Target Start/End: Complemental strand, 21461926 - 21461807
Alignment:
| Q |
485 |
tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt |
584 |
Q |
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| T |
21461926 |
tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt |
21461827 |
T |
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| Q |
585 |
ataacggtgtgtaagtaaac |
604 |
Q |
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| T |
21461826 |
acaacggtgtgtaagtaaac |
21461807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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