View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_13 (Length: 575)

Name: NF11880_low_13
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_13
NF11880_low_13
[»] chr5 (18 HSPs)
chr5 (19-247)||(25226123-25226351)
chr5 (19-247)||(25290279-25290507)
chr5 (19-247)||(25726818-25727046)
chr5 (321-450)||(25225920-25226049)
chr5 (321-450)||(25290076-25290205)
chr5 (321-450)||(25727120-25727249)
chr5 (447-560)||(25727339-25727454)
chr5 (322-443)||(25221242-25221364)
chr5 (322-443)||(25285397-25285519)
chr5 (492-560)||(25225794-25225862)
chr5 (492-560)||(25289950-25290018)
chr5 (181-247)||(25091663-25091729)
chr5 (181-247)||(25149633-25149699)
chr5 (447-508)||(25221601-25221661)
chr5 (447-508)||(25285756-25285816)
chr5 (393-448)||(25091461-25091516)
chr5 (393-448)||(25149431-25149486)
chr5 (180-246)||(26096602-26096668)
[»] chr1 (1 HSPs)
chr1 (366-439)||(25617313-25617388)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 25226351 - 25226123
Alignment:
Q  19 gagtcagcaccgttaggactgccaaggtttggctatgtgtcaggcaaagtacaactcgtccctgccattgaatgtggaatttgttggcgggatgaactct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  25226351 gagtcagcaccgttaggactgccaaggtttggctatgtgtcaggcaaagtaccactcgtccctggcattgaatatggaatttgttggggggatgaactct 25226252  T
Q  119 cagcaagtctaggattgttgacggttgaggaggaagtcgaaggtgcaggtatgttgtaaacttcaacctgccaaggattgactaggtttggaatctgcgg 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25226251 cagcaagtctaggattgttgacggtggaggaggaagtcgaaggtgcatgtatgttgtaaacttcaacctgccaaggattgactaggtttggaatctgcgg 25226152  T
Q  219 gatatcaagtccatcccagttaacctatg 247  Q
    |||||||||||||||||||||||||||||    
T  25226151 gatatcaagtccatcccagttaacctatg 25226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 25290507 - 25290279
Alignment:
Q  19 gagtcagcaccgttaggactgccaaggtttggctatgtgtcaggcaaagtacaactcgtccctgccattgaatgtggaatttgttggcgggatgaactct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  25290507 gagtcagcaccgttaggactgccaaggtttggctatgtgtcaggcaaagtaccactcgtccctggcattgaatatggaatttgttggggggatgaactct 25290408  T
Q  119 cagcaagtctaggattgttgacggttgaggaggaagtcgaaggtgcaggtatgttgtaaacttcaacctgccaaggattgactaggtttggaatctgcgg 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25290407 cagcaagtctaggattgttgacggtggaggaggaagtcgaaggtgcatgtatgttgtaaacttcaacctgccaaggattgactaggtttggaatctgcgg 25290308  T
Q  219 gatatcaagtccatcccagttaacctatg 247  Q
    |||||||||||||||||||||||||||||    
T  25290307 gatatcaagtccatcccagttaacctatg 25290279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 25726818 - 25727046
Alignment:
Q  19 gagtcagcaccgttaggactgccaaggtttggctatgtgtcaggcaaagtacaactcgtccctgccattgaatgtggaatttgttggcgggatgaactct 118  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  25726818 gagtcagcacctttaagactgccaaggtttggctatgtgtcaggcaaagtaccactcgaccctgccattgaatgtggaatttgttggggggatgaactct 25726917  T
Q  119 cagcaagtctaggattgttgacggttgaggaggaagtcgaaggtgcaggtatgttgtaaacttcaacctgccaaggattgactaggtttggaatctgcgg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25726918 cagcaagtctaggattgttgacggttgaggaggaagtcgaaggtgcaggtatgttgtaaacttcaacctgccaaggattgactaggtttggattctgcgg 25727017  T
Q  219 gatatcaagtccatcccagttaacctatg 247  Q
    |||||||||||||||||| ||||||||||    
T  25727018 gatatcaagtccatcccaattaacctatg 25727046  T

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Target: chr5; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 321 - 450
Target Start/End: Complemental strand, 25226049 - 25225920
Alignment:
Q  321 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaaaatctacttagtattagaagtatttacaatgagaaaggcttagaag 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  25226049 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaagatctacttagcattaggagtatttacaatgagaaaggcttagaag 25225950  T
Q  421 gttcttaaacttcataactattttttagtg 450  Q
    ||||||||||||||||||||||||||||||    
T  25225949 gttcttaaacttcataactattttttagtg 25225920  T

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Target: chr5; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 321 - 450
Target Start/End: Complemental strand, 25290205 - 25290076
Alignment:
Q  321 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaaaatctacttagtattagaagtatttacaatgagaaaggcttagaag 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  25290205 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaagatctacttagcattaggagtatttacaatgagaaaggcttagaag 25290106  T
Q  421 gttcttaaacttcataactattttttagtg 450  Q
    ||||||||||||||||||||||||||||||    
T  25290105 gttcttaaacttcataactattttttagtg 25290076  T

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Target: chr5; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 321 - 450
Target Start/End: Original strand, 25727120 - 25727249
Alignment:
Q  321 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaaaatctacttagtattagaagtatttacaatgagaaaggcttagaag 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  25727120 gtgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaagatctacttagcattaggagtatttacaatgagaaaggcttagaag 25727219  T
Q  421 gttcttaaacttcataactattttttagtg 450  Q
    ||||||||||||||||||||||||||||||    
T  25727220 gttcttaaacttcataactattttttagtg 25727249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 447 - 560
Target Start/End: Original strand, 25727339 - 25727454
Alignment:
Q  447 agtgtcatggga--tatctatcaagtgcaagaacaatgggaataaataatgttggagatggagattctgttacaattttctttctcatcaagtatcatct 544  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25727339 agtgtcatgggagatatctatcaagtgcaagaacaatgggaattaataatgatggagatggagattctgttacaattttctgtctcatcaagtatcatct 25727438  T
Q  545 aattatagtttcatgt 560  Q
    ||||||||||||||||    
T  25727439 aattatagtttcatgt 25727454  T

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Target: chr5; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 322 - 443
Target Start/End: Original strand, 25221242 - 25221364
Alignment:
Q  322 tgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaaaatc-tacttagtattagaagtatttacaatgagaaaggcttagaag 420  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| ||| ||||||| | ||| ||| |||||||||||||| |||||||||    
T  25221242 tgtatttacacatcaaaagtttcttatcaattgataacatgagtcaaaatcaagatcctacttagcaataggagtgtttacaatgagaaatgcttagaag 25221341  T
Q  421 gttcttaaacttcataactattt 443  Q
    ||||||||||||||| |||||||    
T  25221342 gttcttaaacttcattactattt 25221364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 322 - 443
Target Start/End: Original strand, 25285397 - 25285519
Alignment:
Q  322 tgtatttagacatcaaaagtttcttatcaattaataacctgagccaaaatcaaaatc-tacttagtattagaagtatttacaatgagaaaggcttagaag 420  Q
    |||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| ||| ||||||| | ||| ||| |||||||||||||| |||||||||    
T  25285397 tgtatttacacatcaaaagtttcttatcaattgataacatgagtcaaaatcaagatcctacttagcaataggagtgtttacaatgagaaatgcttagaag 25285496  T
Q  421 gttcttaaacttcataactattt 443  Q
    ||||||||||||||| |||||||    
T  25285497 gttcttaaacttcattactattt 25285519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 25225862 - 25225794
Alignment:
Q  492 aatgttggagatggagattctgttacaattttctttctcatcaagtatcatctaattatagtttcatgt 560  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25225862 aatgttgcagatggagattctgttacaattttctgtctcatcaagtatcatctaattatagtttcatgt 25225794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 25290018 - 25289950
Alignment:
Q  492 aatgttggagatggagattctgttacaattttctttctcatcaagtatcatctaattatagtttcatgt 560  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25290018 aatgttgcagatggagattctgttacaattttctgtctcatcaagtatcatctaattatagtttcatgt 25289950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 25091729 - 25091663
Alignment:
Q  181 tcaacctgccaaggattgactaggtttggaatctgcgggatatcaagtccatcccagttaacctatg 247  Q
    ||||| ||||||||||||||  |||||||| |||||| ||||||  | |||||||||||||||||||    
T  25091729 tcaacttgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatg 25091663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 25149699 - 25149633
Alignment:
Q  181 tcaacctgccaaggattgactaggtttggaatctgcgggatatcaagtccatcccagttaacctatg 247  Q
    ||||| ||||||||||||||  |||||||| |||||| ||||||  | |||||||||||||||||||    
T  25149699 tcaacttgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatg 25149633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 25221601 - 25221661
Alignment:
Q  447 agtgtcatgggatatctatcaagtgcaagaacaatgggaataaataatgttggagatggaga 508  Q
    ||||| ||| ||| |||||||||||||||||||| |||||  ||||||||||||||||||||    
T  25221601 agtgttatgagatgtctatcaagtgcaagaacaa-gggaaataataatgttggagatggaga 25221661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 25285756 - 25285816
Alignment:
Q  447 agtgtcatgggatatctatcaagtgcaagaacaatgggaataaataatgttggagatggaga 508  Q
    ||||| ||| ||| |||||||||||||||||||| |||||  ||||||||||||||||||||    
T  25285756 agtgttatgagatgtctatcaagtgcaagaacaa-gggaaataataatgttggagatggaga 25285816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 25091516 - 25091461
Alignment:
Q  393 agtatttacaatgagaaaggcttagaaggttcttaaacttcataactattttttag 448  Q
    |||||| ||||||||||| |||||||||||||||||   |||||||||||| ||||    
T  25091516 agtattcacaatgagaaatgcttagaaggttcttaattatcataactatttcttag 25091461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 25149486 - 25149431
Alignment:
Q  393 agtatttacaatgagaaaggcttagaaggttcttaaacttcataactattttttag 448  Q
    |||||| ||||||||||| |||||||||||||||||   |||||||||||| ||||    
T  25149486 agtattcacaatgagaaatgcttagaaggttcttaattatcataactatttcttag 25149431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 26096602 - 26096668
Alignment:
Q  180 ttcaacctgccaaggattgactaggtttggaatctgcgggatatcaagtccatcccagttaacctat 246  Q
    |||||||||||||||||||||  |||||||| ||||||  || ||| || ||||||| |||||||||    
T  26096602 ttcaacctgccaaggattgacacggtttggattctgcgaaatttcaggttcatcccacttaacctat 26096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 25617388 - 25617313
Alignment:
Q  366 caaaatcaaaatctacttagtattagaagtatttaca--atgagaaaggcttagaaggttcttaaacttcataact 439  Q
    |||||| || |||||||||| || | |||||||||||  ||| |||| ||||||||||||||||||||||| ||||    
T  25617388 caaaataaagatctacttagcatgaaaagtatttacacaatgggaaatgcttagaaggttcttaaacttcaaaact 25617313  T

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