View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_14 (Length: 535)

Name: NF11880_low_14
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_14
NF11880_low_14
[»] chr2 (19 HSPs)
chr2 (3-521)||(39494837-39495355)
chr2 (79-510)||(39129754-39130185)
chr2 (119-521)||(39123782-39124184)
chr2 (3-484)||(39427000-39427481)
chr2 (61-302)||(39143117-39143358)
chr2 (415-521)||(39602290-39602396)
chr2 (374-521)||(39381878-39382025)
chr2 (253-510)||(39398695-39398952)
chr2 (374-521)||(39450798-39450945)
chr2 (430-521)||(44896057-44896148)
chr2 (429-521)||(39369550-39369642)
chr2 (430-510)||(39391534-39391614)
chr2 (429-521)||(39199202-39199294)
chr2 (253-503)||(39467286-39467536)
chr2 (202-328)||(39161393-39161519)
chr2 (202-328)||(39207675-39207801)
chr2 (202-328)||(39391309-39391435)
chr2 (404-521)||(39220461-39220578)
chr2 (251-319)||(39220660-39220728)
[»] chr5 (1 HSPs)
chr5 (430-501)||(33559756-33559827)


Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 3 - 521
Target Start/End: Original strand, 39494837 - 39495355
Alignment:
Q  3 ctctttcaacactagctgtctcgctcgtccttcaagtttcctttcatttgattccaattcctttacctggctatcaaaatgctgcttttcataatcaagc 102  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  39494837 ctctttcaacactagctgtctcgctcgtctttcaagttgcctttcatttgattccaattccttcacccggctatcaaaatgctgcttttcatattcaagc 39494936  T
Q  103 tcttttatttggccatgaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttgacttgagcttctttacacgacctt 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39494937 tcttttatttggccatgaaatttctccaacattggttcaaactctttcacttggcttttgagttgcttcttttttgacttgagcttctttacacgacctt 39495036  T
Q  203 caaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495037 caaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcat 39495136  T
Q  303 tgactcaaaatccttcacttgagcacgtggatcattcttacttaattgcattatcctaagtaactttatcctttccgactctaatcattcagcttgtttg 402  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |    
T  39495137 tgactcaaagtccttcacttgagcacgtggatcattcttacttaattgcattatcctaagtaactttatcctttccaactctaatcgttcagcttgttcg 39495236  T
Q  403 tcaattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttcct 502  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39495237 tcaattagttttttcattgtatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttcct 39495336  T
Q  503 tcccttcacggaccttatc 521  Q
    ||||||||| |||||||||    
T  39495337 tcccttcacagaccttatc 39495355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 79 - 510
Target Start/End: Complemental strand, 39130185 - 39129754
Alignment:
Q  79 aaatgctgcttttcataatcaagctcttttatttggccatgaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttg 178  Q
    ||||||| ||||||| | |||||||  || |||||||||||| |||||| || | | |  | ||||||| ||||||||  ||   ||||||||| ||||     
T  39130185 aaatgcttcttttcagattcaagctgcttcatttggccatgatatttctgcaccttcgacttgaactccatcacttggtcttcatgttgcttctctttta 39130086  T
Q  179 acttgagcttctttacacgaccttcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaac 278  Q
    |||| ||||  |||||||| |||||||||||||||||||||||||||||||||||| || |||||  | ||||||||||||||||||||||||| |||||    
T  39130085 acttcagctcatttacacggccttcaaagagcttctcctttgactcaagctccaccacttgttctccgcaccttttctcttttaactcaagctctttaac 39129986  T
Q  279 ctgggcatcaaattgcttcttcattgactcaaaatccttcacttgagcacgtggatcattcttacttaattgcattatcctaagtaactttatcctttcc 378  Q
    |||  | |||||||||||||||||||||||||   |||| ||||||||| |||||||||||||||| |||||  ||| | | ||||||||  |||||||     
T  39129985 ctgctcttcaaattgcttcttcattgactcaaggccctttacttgagcatgtggatcattcttactcaattgggttaccttgagtaacttcttcctttca 39129886  T
Q  379 gactctaatcattcagcttgtttgtcaattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaattttttggg 478  Q
    ||||||| |  ||| |||||| ||||||||| ||| ||||||| ||||| |||||||||||||  ||| |||||||||| ||| |||||||| |||||||    
T  39129885 gactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtacactgagcaatattttggg 39129786  T
Q  479 aaagagctttgagttcctgttccttcccttca 510  Q
    ||||| | ||||||||||||| ||||| ||||    
T  39129785 aaagatccttgagttcctgtttcttcctttca 39129754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 119 - 521
Target Start/End: Complemental strand, 39124184 - 39123782
Alignment:
Q  119 gaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttgacttgagcttctttacacgaccttcaaagagcttctcctt 218  Q
    ||||| |||||| | ||| || ||||||||||||||||| || ||| ||||||| |||| |||||||||| |||||||  |||| |||||||||||||||    
T  39124184 gaaatctctccacctttgatttgaactccttcacttggccttcgaggtgcttctcttttaacttgagcttgtttacacagcctttaaagagcttctcctt 39124085  T
Q  219 tgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcattgactcaaaatccttc 318  Q
    |||||| |||||||||  ||||||| || | |||||||||||||||| || |||| |||||||  | ||||||||||| ||| |||||||| | ||| ||    
T  39124084 tgactcgagctccaccattcgttctctgcagcttttctcttttaacttaatctccataacctgctcttcaaattgcttattcgttgactcatagtccatc 39123985  T
Q  319 acttgagcacgtggatcattcttacttaattgcattatcctaagtaactttatcctttccgactctaatcattcagcttgtttgtcaattagttttttca 418  Q
    | |||||||||| ||||||||||||||||||||||||  || || ||||| ||||||||||||||||||| ||| || |||| ||||||| | |||||||    
T  39123984 atttgagcacgttgatcattcttacttaattgcattacgctcagaaacttcatcctttccgactctaatctttctgcctgttcgtcaatttgctttttca 39123885  T
Q  419 ttggatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacggacctt 518  Q
    |||  | |  |  ||||||||||| ||||||||||| || ||||| |||| || | | ||||| ||| |||||||||   ||| |||||| |||||||||    
T  39123884 ttgctttaatcagtttctctttggtcttaagttccaaagtacattcagcagttctgttggaaaaagccttgagttcccactccatccctttacggacctt 39123785  T
Q  519 atc 521  Q
    |||    
T  39123784 atc 39123782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 3 - 484
Target Start/End: Original strand, 39427000 - 39427481
Alignment:
Q  3 ctctttcaacactagctgtctcgctcgtccttcaagtttcctttcatttgattccaattcctttacctggctatcaaaatgctgcttttcataatcaagc 102  Q
    |||||| ||| |||||||  |||  |||||||||| || ||| ||  |||||||||  ||||| | ||||||||||||||||| ||||||| | ||||||    
T  39427000 ctctttaaactctagctgcttcgaccgtccttcaaattgcctctctcttgattccatctccttcatctggctatcaaaatgcttcttttcagattcaagc 39427099  T
Q  103 tcttttatttggccatgaaatttctccaacattggttcgaactccttcacttggcttttgagttgcttcttttttgacttgagcttctttacacgacctt 202  Q
    ||  |  |||||  || ||||||||||||| |   |   |||||||||  || |  |||||| || |||| |||| |||||| ||  ||||| |  ||||    
T  39427100 tccctcgtttggtaatcaaatttctccaacttcaatgtaaactccttcctttcgtctttgagctgattctcttttaacttgatctcatttacgcagcctt 39427199  T
Q  203 caaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcat 302  Q
    ||||| |||||||||||||||||||| ||||||||| ||||  | | |||||||||||||||||||||  |||||||    | ||||||||||||||||     
T  39427200 caaagtgcttctcctttgactcaagcaccaccgctctttcttcgcatcttttctcttttaactcaagcctcttaaccctctcttcaaattgcttcttcag 39427299  T
Q  303 tgactcaaaatccttcacttgagcacgtggatcattcttacttaattgcattatcctaagtaactttatcctttccgactctaatcattcagcttgtttg 402  Q
    ||||||||| |||  || |||||   |||||||||||||||||||||| |||| | | ||||||||  ||||||| || | ||||| ||| ||||||| |    
T  39427300 tgactcaaactccaccatttgagtttgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcg 39427399  T
Q  403 tcaattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagag 484  Q
    |||||| |||||||||| | ||||| |||||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  39427400 tcaatttgttttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaagag 39427481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 302
Target Start/End: Complemental strand, 39143358 - 39143117
Alignment:
Q  61 tcctttacctggctatcaaaatgctgcttttcataatcaagctcttttatttggccatgaaatttctccaacattggttcgaactccttcacttggcttt 160  Q
    ||||| ||| |||||||||||| || ||||| | | |||||||| ||  |||| | |||||||||||||||| |   ||| |||||||||||||  | ||    
T  39143358 tccttcacccggctatcaaaattcttctttttagattcaagctccttcgtttgccaatgaaatttctccaacttcaattcaaactccttcacttcacctt 39143259  T
Q  161 tgagttgcttcttttttgacttgagcttctttacacgaccttcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttt 260  Q
    ||||  | |||| |||| ||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    |||||||||||||    
T  39143258 tgagccgattctcttttaacttgagctcctttacacggccttcaaagagcttctccttggcctcaagctccaccgctcgttctgcacaccttttctcttt 39143159  T
Q  261 taactcaagctccttaacctgggcatcaaattgcttcttcat 302  Q
    ||||| ||| ||| ||||| |  | |||||||||||||||||    
T  39143158 taactgaagatccctaacccgctcttcaaattgcttcttcat 39143117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 415 - 521
Target Start/End: Complemental strand, 39602396 - 39602290
Alignment:
Q  415 ttcattggatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacgga 514  Q
    ||||||| ||||  |||| ||||||||||||||||||||| || | ||| ||||||||||||||||||||| |||||||||| |||||||| |||||||     
T  39602396 ttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagagccttgagttcctcttccttcctttcacggt 39602297  T
Q  515 ccttatc 521  Q
    |||||||    
T  39602296 ccttatc 39602290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 521
Target Start/End: Original strand, 39381878 - 39382025
Alignment:
Q  374 tttccgactctaatcattcagcttgtttgtcaattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaatttt 473  Q
    |||| |||||||||  ||| |||||| || ||||||  || ||||||| ||||  |||| ||||||||||||||||||||| |  | ||| ||||||||     
T  39381878 tttcagactctaatttttccgcttgtgtgccaattaacttgttcattgtatcaagctctatctctttggccttaagttccaaaataaattcagcaatttg 39381977  T
Q  474 ttgggaaagagctttgagttcctgttccttcccttcacggaccttatc 521  Q
    |||||||||||| |||||||||| |||||||| ||||||| |||||||    
T  39381978 ttgggaaagagccttgagttcctcttccttcctttcacggtccttatc 39382025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 253 - 510
Target Start/End: Original strand, 39398695 - 39398952
Alignment:
Q  253 ttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcattgactcaaaatccttcacttgagcacgtggatcattcttacttaattgca 352  Q
    ||||||||| ||||||| |||||||||||  | |||||   ||||||||||||||| || || | || ||||||||||||||||||||  || | |  ||    
T  39398695 ttctcttttgactcaagttccttaacctgaccttcaaaacacttcttcattgactcgaagtcttccatttgagcacgtggatcattctgcctgattgaca 39398794  T
Q  353 ttatcctaagtaactttatcctttccgactctaatcattcagcttgtttgtcaattagttttttcattggatcacactctttctctttggccttaagttc 452  Q
    ||| | | ||||||||  ||||||||||||||||   ||| ||||||  |  || || | ||||||||| ||||  |||||||||||||| ||  |||||    
T  39398795 ttacctttagtaacttcttcctttccgactctaaaatttctgcttgtccgctaactaatattttcattgcatcaagctctttctctttggactctagttc 39398894  T
Q  453 cacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttca 510  Q
    || |  |||||  |||| |||||||| |||||| |||||||||| |||||||| ||||    
T  39398895 catattacattcggcaactttttgggcaagagccttgagttcctcttccttcctttca 39398952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 521
Target Start/End: Complemental strand, 39450945 - 39450798
Alignment:
Q  374 tttccgactctaatcattcagcttgtttgtcaattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaatttt 473  Q
    |||| |||||||||  ||||||||||||| |||||||||| |||| || ||||   ||| ||||||||||||||  ||  | || | ||| |||| ||||    
T  39450945 tttcagactctaatttttcagcttgtttgccaattagtttgttcaatgcatcaagttctatctctttggccttacatttaaaagtaaattcagcattttt 39450846  T
Q  474 ttgggaaagagctttgagttcctgttccttcccttcacggaccttatc 521  Q
    |||||||||||| |||||||||| |||||||| ||||||| |||||||    
T  39450845 ttgggaaagagccttgagttcctcttccttcctttcacggtccttatc 39450798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 430 - 521
Target Start/End: Original strand, 44896057 - 44896148
Alignment:
Q  430 tctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacggaccttatc 521  Q
    ||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| ||||||| || |||||||| ||||||  |||||||    
T  44896057 tctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttgagttgctcttccttcctttcacgatccttatc 44896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 521
Target Start/End: Complemental strand, 39369642 - 39369550
Alignment:
Q  429 ctctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacggaccttatc 521  Q
    |||| ||||||||||| ||| |||||||| |  || ||||||||||||||||||||| |||||||||| |||||||| |||| ||||||||||    
T  39369642 ctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttgagttcctcttccttcctttcatggaccttatc 39369550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 430 - 510
Target Start/End: Original strand, 39391534 - 39391614
Alignment:
Q  430 tctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttca 510  Q
    |||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||| || ||||||| ||||||| |||||    
T  39391534 tctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagagccttcagttcctcttccttcacttca 39391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 521
Target Start/End: Original strand, 39199202 - 39199294
Alignment:
Q  429 ctctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttccttcccttcacggaccttatc 521  Q
    |||||||| ||||||||||  ||||| || | ||| |||||||| |||||||||||| |||||||||| |||||||| ||||||| |||||||    
T  39199202 ctctttctgtttggccttatattccaaagtaaattcagcaatttgttgggaaagagccttgagttcctcttccttcctttcacggtccttatc 39199294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 503
Target Start/End: Complemental strand, 39467536 - 39467286
Alignment:
Q  253 ttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcattgactcaaaatccttcacttgagcacgtggatcattcttacttaattgca 352  Q
    |||| |||| ||||||| ||||| |||||  | |||||| |||||||| ||||| |||| || |||| | ||||| ||||||||||||  || | |   |    
T  39467536 ttctgttttgactcaagttccttgacctgatcttcaaatcgcttcttctttgacgcaaagtctttcattcgagcatgtggatcattctgtctgattgata 39467437  T
Q  353 ttatcctaagtaactttatcctttccgactctaatcattcagcttgtttgtcaattagttttttcattggatcacactctttctctttggccttaagttc 452  Q
    ||| | | ||||||||  ||||||| |||||||||  ||| |||||| ||  ||  ||| ||||||||| ||||  |||||||||||||| || ||||||    
T  39467436 ttacctttagtaacttcttcctttcggactctaatatttctgcttgtctgctaaccagtattttcattgaatcaagctctttctctttggactcaagttc 39467337  T
Q  453 cacagaacattgagcaattttttgggaaagagctttgagttcctgttcctt 503  Q
    || |  ||||| ||||| |||||| | |||||| |||||| ||| ||||||    
T  39467336 catattacatttagcaactttttgagtaagagccttgagtccctcttcctt 39467286  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 39161519 - 39161393
Alignment:
Q  202 tcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttca 301  Q
    |||||| ||||||||||||||| ||||||| || ||||| ||   |||   ||||||||| ||||||| ||||||||| || | | ||||||||||| |     
T  39161519 tcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctcttttgactcaagttccttaacccggactttaaattgcttctgct 39161420  T
Q  302 ttgactcaaaatccttcacttgagcac 328  Q
    |||||||||| ||||||| | ||||||    
T  39161419 ttgactcaaattccttcattagagcac 39161393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 39207675 - 39207801
Alignment:
Q  202 tcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttca 301  Q
    |||||| ||||||||||||||| ||||||| || ||||| ||   |||   ||||||||| ||||||| ||||||||| || | | ||||||||||| |     
T  39207675 tcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctcttttgactcaagttccttaacccggactttaaattgcttctgct 39207774  T
Q  302 ttgactcaaaatccttcacttgagcac 328  Q
    |||||||||| ||||||| | ||||||    
T  39207775 ttgactcaaattccttcattagagcac 39207801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 39391309 - 39391435
Alignment:
Q  202 tcaaagagcttctcctttgactcaagctccaccgctcgttctatgtaccttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttca 301  Q
    |||||| ||||||||||||||| ||||||| || ||||| ||    ||   ||||||||| ||||||| ||||||||| || | | ||||||||||| |     
T  39391309 tcaaagtgcttctcctttgactgaagctcctccactcgtccttcacactgcttctcttttgactcaagttccttaacccggcctttaaattgcttctgct 39391408  T
Q  302 ttgactcaaaatccttcacttgagcac 328  Q
    |||||||||| ||||||| | ||||||    
T  39391409 ttgactcaaagtccttcattagagcac 39391435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 521
Target Start/End: Complemental strand, 39220578 - 39220461
Alignment:
Q  404 caattagttttttcattggatcacactctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttcctt 503  Q
    |||||| ||| |||| || ||||  ||| |||||||||||||||   |||| || |  || ||||||||||||||||||||| |||| ||||| ||||||    
T  39220578 caattaatttgttcactgcatcaagctcgttctctttggccttacagtccaaagcaagttcagcaattttttgggaaagagccttgatttcctcttcctt 39220479  T
Q  504 cccttcacggaccttatc 521  Q
    || |||| || |||||||    
T  39220478 cctttcatggtccttatc 39220461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 39220728 - 39220660
Alignment:
Q  251 ttttctcttttaactcaagctccttaacctgggcatcaaattgcttcttcattgactcaaaatccttca 319  Q
    ||||||||||| ||||||| ||||||| | |  |||||||| |||||| | |||||||||| |||||||    
T  39220728 ttttctcttttgactcaagttccttaaaccgatcatcaaatcgcttctgctttgactcaaattccttca 39220660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 33559827 - 33559756
Alignment:
Q  430 tctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagctttgagttcctgttcc 501  Q
    |||||||||||| ||| ||||||||||| ||||| |||||  ||||||||||||||  ||||||||| ||||    
T  33559827 tctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagagccctgagttcctcttcc 33559756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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