View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_15 (Length: 499)

Name: NF11880_low_15
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_15
NF11880_low_15
[»] chr8 (25 HSPs)
chr8 (100-480)||(3654976-3655356)
chr8 (1-99)||(16383377-16383475)
chr8 (1-99)||(16056403-16056501)
chr8 (1-99)||(24307795-24307893)
chr8 (1-99)||(30479476-30479574)
chr8 (1-99)||(34307216-34307314)
chr8 (18-99)||(24307629-24307710)
chr8 (1-99)||(32032725-32032822)
chr8 (9-100)||(15048192-15048282)
chr8 (17-99)||(4854881-4854963)
chr8 (29-102)||(20074964-20075037)
chr8 (34-94)||(5957835-5957895)
chr8 (9-97)||(10621097-10621185)
chr8 (9-101)||(15197331-15197423)
chr8 (9-101)||(43414591-43414683)
chr8 (34-99)||(37038479-37038544)
chr8 (9-101)||(504131-504223)
chr8 (9-100)||(40423953-40424044)
chr8 (9-99)||(12831047-12831137)
chr8 (34-99)||(1179975-1180040)
chr8 (34-102)||(23122632-23122700)
chr8 (34-102)||(34012331-34012399)
chr8 (9-92)||(14547929-14548012)
chr8 (29-99)||(15258959-15259029)
chr8 (7-55)||(32708013-32708061)
[»] chr5 (23 HSPs)
chr5 (1-99)||(2252170-2252268)
chr5 (1-99)||(3921267-3921365)
chr5 (14-101)||(28177773-28177860)
chr5 (9-100)||(26720515-26720606)
chr5 (9-100)||(26990264-26990355)
chr5 (1-99)||(39688899-39688997)
chr5 (14-99)||(6679698-6679783)
chr5 (34-101)||(14831812-14831879)
chr5 (9-99)||(15409620-15409710)
chr5 (34-99)||(2740274-2740339)
chr5 (34-94)||(16327906-16327966)
chr5 (9-94)||(18520894-18520979)
chr5 (34-99)||(33825359-33825424)
chr5 (36-95)||(10356638-10356698)
chr5 (9-101)||(42414312-42414404)
chr5 (34-100)||(35785198-35785264)
chr5 (9-103)||(40145403-40145497)
chr5 (34-99)||(35943927-35943992)
chr5 (34-99)||(36732977-36733042)
chr5 (34-102)||(33149673-33149741)
chr5 (16-99)||(9603813-9603896)
chr5 (40-94)||(36875644-36875698)
chr5 (34-99)||(31008988-31009053)
[»] chr6 (14 HSPs)
chr6 (1-100)||(15508026-15508125)
chr6 (1-99)||(15990044-15990142)
chr6 (1-99)||(30341362-30341460)
chr6 (1-100)||(4231547-4231646)
chr6 (9-99)||(31976248-31976338)
chr6 (30-101)||(31953061-31953132)
chr6 (34-94)||(28536521-28536581)
chr6 (28-99)||(12732482-12732553)
chr6 (9-102)||(32869675-32869768)
chr6 (17-99)||(31110779-31110859)
chr6 (9-94)||(22880668-22880753)
chr6 (9-101)||(17598552-17598644)
chr6 (34-78)||(11427639-11427683)
chr6 (34-78)||(31109435-31109479)
[»] chr3 (31 HSPs)
chr3 (1-100)||(45058555-45058653)
chr3 (1-77)||(36331331-36331407)
chr3 (16-102)||(26141549-26141635)
chr3 (9-99)||(41189774-41189864)
chr3 (30-99)||(14623870-14623939)
chr3 (1-106)||(42823104-42823209)
chr3 (34-94)||(13898090-13898150)
chr3 (9-104)||(53982006-53982101)
chr3 (17-99)||(11347940-11348022)
chr3 (15-100)||(20764931-20765016)
chr3 (9-96)||(26754698-26754785)
chr3 (9-99)||(11907371-11907461)
chr3 (17-99)||(24699972-24700054)
chr3 (9-99)||(47531865-47531955)
chr3 (9-99)||(51419370-51419460)
chr3 (34-99)||(11095388-11095453)
chr3 (18-99)||(35536626-35536707)
chr3 (34-99)||(49607414-49607479)
chr3 (34-95)||(52629304-52629365)
chr3 (16-95)||(25395350-25395429)
chr3 (9-100)||(33644199-33644290)
chr3 (9-99)||(8076393-8076483)
chr3 (9-99)||(27714901-27714991)
chr3 (29-99)||(36331408-36331478)
chr3 (34-99)||(8956762-8956827)
chr3 (9-94)||(31456694-31456779)
chr3 (34-99)||(33118886-33118951)
chr3 (1-78)||(48587093-48587170)
chr3 (34-99)||(54868930-54868995)
chr3 (16-94)||(30801750-30801828)
chr3 (29-99)||(35965804-35965874)
[»] chr1 (24 HSPs)
chr1 (1-100)||(50591002-50591101)
chr1 (1-100)||(41608495-41608594)
chr1 (1-101)||(47748441-47748540)
chr1 (1-99)||(5959002-5959100)
chr1 (9-99)||(32813247-32813337)
chr1 (1-58)||(44332373-44332430)
chr1 (34-99)||(3000319-3000384)
chr1 (14-99)||(45044575-45044660)
chr1 (34-102)||(27564770-27564838)
chr1 (9-99)||(2581915-2582005)
chr1 (34-100)||(9474911-9474977)
chr1 (1-99)||(37926440-37926538)
chr1 (26-99)||(23597118-23597191)
chr1 (34-99)||(38595154-38595219)
chr1 (34-99)||(51898718-51898783)
chr1 (14-106)||(26440727-26440819)
chr1 (29-101)||(37649196-37649268)
chr1 (14-101)||(6260868-6260955)
chr1 (9-104)||(49811537-49811632)
chr1 (16-102)||(3302550-3302636)
chr1 (16-99)||(7740733-7740816)
chr1 (38-101)||(47452359-47452422)
chr1 (9-100)||(48716292-48716383)
chr1 (9-94)||(44548386-44548471)
[»] chr4 (25 HSPs)
chr4 (1-99)||(8343165-8343263)
chr4 (1-99)||(19670718-19670816)
chr4 (17-99)||(55475191-55475273)
chr4 (1-99)||(29547961-29548059)
chr4 (1-99)||(32766958-32767056)
chr4 (1-99)||(47986208-47986306)
chr4 (1-99)||(50813894-50813992)
chr4 (1-78)||(17983745-17983822)
chr4 (16-99)||(55079731-55079814)
chr4 (1-102)||(18924497-18924598)
chr4 (9-100)||(11511472-11511563)
chr4 (9-100)||(31910191-31910282)
chr4 (34-101)||(40574777-40574844)
chr4 (16-99)||(44536763-44536845)
chr4 (1-91)||(29589742-29589831)
chr4 (9-99)||(50052438-50052528)
chr4 (31-100)||(6034043-6034112)
chr4 (29-100)||(50526201-50526272)
chr4 (9-104)||(48183059-48183154)
chr4 (34-99)||(480482-480547)
chr4 (16-76)||(29977908-29977968)
chr4 (34-101)||(3481652-3481719)
chr4 (9-99)||(41236347-41236437)
chr4 (29-99)||(48647756-48647826)
chr4 (9-78)||(24995117-24995186)
[»] chr2 (32 HSPs)
chr2 (1-101)||(43490119-43490219)
chr2 (1-99)||(45097737-45097835)
chr2 (1-99)||(13365351-13365451)
chr2 (9-101)||(40613912-40614004)
chr2 (1-78)||(2997489-2997566)
chr2 (1-99)||(38732354-38732452)
chr2 (9-99)||(42257193-42257283)
chr2 (14-108)||(38273157-38273251)
chr2 (9-99)||(9058480-9058570)
chr2 (25-99)||(15428766-15428840)
chr2 (34-99)||(5574523-5574588)
chr2 (29-100)||(17820034-17820105)
chr2 (19-99)||(33436211-33436291)
chr2 (29-99)||(26891534-26891604)
chr2 (1-99)||(36168836-36168934)
chr2 (9-94)||(28863460-28863545)
chr2 (34-99)||(30915463-30915528)
chr2 (1-45)||(3034985-3035029)
chr2 (14-94)||(19930835-19930915)
chr2 (9-99)||(2533124-2533213)
chr2 (9-99)||(33436110-33436200)
chr2 (34-100)||(40701477-40701543)
chr2 (34-99)||(7465770-7465835)
chr2 (34-99)||(17473020-17473085)
chr2 (9-102)||(28381665-28381758)
chr2 (9-101)||(13438341-13438433)
chr2 (9-56)||(3737986-3738033)
chr2 (34-101)||(27864702-27864769)
chr2 (9-99)||(10249392-10249482)
chr2 (9-99)||(32505658-32505748)
chr2 (34-99)||(20700815-20700880)
chr2 (34-99)||(38882849-38882913)
[»] chr7 (29 HSPs)
chr7 (1-100)||(32564428-32564527)
chr7 (1-99)||(22343361-22343459)
chr7 (1-99)||(41915741-41915839)
chr7 (1-99)||(38044197-38044295)
chr7 (1-101)||(8238210-8238311)
chr7 (1-99)||(7727906-7728004)
chr7 (9-99)||(26296644-26296734)
chr7 (1-99)||(40846115-40846213)
chr7 (9-99)||(46374812-46374902)
chr7 (9-98)||(35522877-35522966)
chr7 (29-99)||(46033831-46033901)
chr7 (9-101)||(21234399-21234491)
chr7 (34-101)||(19329840-19329907)
chr7 (9-99)||(8080393-8080483)
chr7 (34-99)||(3434562-3434627)
chr7 (9-99)||(7389389-7389479)
chr7 (17-99)||(35468873-35468955)
chr7 (29-99)||(36208173-36208243)
chr7 (34-99)||(19436222-19436287)
chr7 (34-99)||(36361948-36362013)
chr7 (28-100)||(39255952-39256024)
chr7 (28-99)||(18207180-18207251)
chr7 (38-101)||(35137531-35137594)
chr7 (9-100)||(38267039-38267130)
chr7 (47-101)||(31735882-31735936)
chr7 (16-94)||(32045842-32045920)
chr7 (34-99)||(36362026-36362091)
chr7 (34-99)||(40957707-40957772)
chr7 (34-94)||(3784000-3784060)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-74)||(152523-152596)
[»] scaffold0321 (1 HSPs)
scaffold0321 (34-99)||(10144-10209)
[»] scaffold0316 (1 HSPs)
scaffold0316 (9-102)||(17055-17144)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 100 - 480
Target Start/End: Complemental strand, 3655356 - 3654976
Alignment:
Q  100 atataatttctagcattcatgtggattttaacacatttccaaaataaaaagtacattacattattgtatatttctagagatatgattattcatgagctcc 199  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655356 atataatttctagcattcatgtggatcttgagacatttccaaaataaaaagtacattacattattgtatatttctagagatatgattattcatgagctcc 3655257  T
Q  200 catctcatatcatattattcaaacaatgtattttatcagaaaagaaaaacaaaactatattttatattttcttttgacacttgatacaaatatcaaaggc 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655256 catctcatatcatattattcaaacaatatattttatcagaaaagaaaaaaaaaactatattttatattttcttttgacacttgatacaaatatcaaaggc 3655157  T
Q  300 tttcataaagctccaatgggagacgtggttggagcataacatcaagtggattttccttaggcaatgccaatcctactccttcaatcatatcaactggacc 399  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655156 tttcataaagttccaatgggagacgtggttggagcataacatcaagtggattttccttaggcaatgccaatcctactccttcaatcatatcaactggacc 3655057  T
Q  400 accatcttttgtgtttatatcaaacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcacc 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3655056 accatcttttgtgtttatatcaaacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcacc 3654976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 16383475 - 16383377
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  16383475 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16056403 - 16056501
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| || | ||||| ||| |||| ||||||||||||||||||||    
T  16056403 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24307795 - 24307893
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||| || | ||||||||||||||  |||||||||||||||||||    
T  24307795 aaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30479476 - 30479574
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||  |||||||||||||||||||    
T  30479476 aaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34307314 - 34307216
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| ||||||| |||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  34307314 aaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24307710 - 24307629
Alignment:
Q  18 ggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||  |||||||||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32032822 - 32032725
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| || || |||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||||  |||||||||||||||||||    
T  32032822 aaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 15048192 - 15048282
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||| |||| || |||||||||||| ||||| |||||| |||| |||||||||||||| |||| ||||||||||||||||    
T  15048192 cttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 4854881 - 4854963
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||| ||||||||| |||||||||||||| ||||| || |||| |||||||||||||| |||| |||||||||| ||||    
T  4854881 gggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactc 4854963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 20074964 - 20075037
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||| ||||| ||||||||||||||||||| | || |||||||||||||| |||| |||||||||| |||||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactcata 20075037  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 5957895 - 5957835
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||||| |||||||||||| |||| |||||||||||||| |||| ||||||||||    
T  5957895 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 10621097 - 10621185
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataac 97  Q
    |||| ||||| || || |||| || |||||||||||| |||||||||||| |||| |||| ||||||||| |||| |||||||||||||    
T  10621097 cttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 15197423 - 15197331
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||||    
T  15197423 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcat 15197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 43414591 - 43414683
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||| ||||| || |||| ||| |||||||| |||||||||||| |||| | |||||| ||||| |||| |||||||||||||||||    
T  43414591 cttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactcat 43414683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 37038544 - 37038479
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||||||||  |||| |||||||||| ||||    
T  37038544 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 504131 - 504223
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||||||  || | || |||||||||||| ||||||||||||  ||| ||||||||||||||  ||| |||||||||| ||||||    
T  504131 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcat 504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 40423953 - 40424044
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| |||||||||| ||| | || |||||||||||| ||||| |||||| |||| ||||||||||||||  | | |||||||||| |||||    
T  40423953 cttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 12831137 - 12831047
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||| ||||||||  ||| |||||||||| ||||    
T  12831137 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 1179975 - 1180040
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||| |||||||||  ||| |||||||||| ||||    
T  1179975 tgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 23122632 - 23122700
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||||||||||| ||||||||||||  ||| ||||||||| ||||  ||| |||||||||| |||||||    
T  23122632 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactcata 23122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 34012331 - 34012399
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    ||||| |||||| |||||||||||| |||| |||| |||||||||  ||| |||||||||| |||||||    
T  34012331 tgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcata 34012399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 14548012 - 14547929
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatc 92  Q
    |||| ||||||||||  || | || |||||||||||| ||||||||||||  ||| ||||||||||||||  ||| ||||||||    
T  14548012 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 15258959 - 15259029
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||||| |||| | || | |||||||| |||||  | | |||||||||||||||    
T  15258959 ccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 32708013 - 32708061
Alignment:
Q  7 tacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgt 55  Q
    |||||| ||||||||||||| ||||||| |||||||||| | |||||||    
T  32708013 tacttgtgcggggtccatatagccacatctcagatttttgtatgggtgt 32708061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2252170 - 2252268
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  2252170 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3921267 - 3921365
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  3921267 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 28177860 - 28177773
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    ||||||||||| || |||| |||||||||||| |||||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  28177860 gcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactcat 28177773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26720606 - 26720515
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||| ||||| ||||||| |||||||||||| ||| ||||| || |||| |||||||||||||| |||| ||||||||||||||||    
T  26720606 cttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26990355 - 26990264
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||| ||||| ||||||| |||||||||||| ||| ||||| || |||| |||||||||||||| |||| ||||||||||||||||    
T  26990355 cttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39688899 - 39688997
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||  ||||||| |||||| |||||| |||||||||| |||||||||||| || | ||||||||| ||||  |||||||||||||||||||    
T  39688899 aaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 6679783 - 6679698
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||  ||| |||||||||||||  |||| |||||||||||||||    
T  6679783 gcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 14831879 - 14831812
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||||    
T  14831879 tgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcat 14831812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 15409620 - 15409710
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||| |||| || |||||||||||| |||||||||||| |  | ||||| |||||||| |||| |||||||||||||||    
T  15409620 cttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 2740339 - 2740274
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||||||||| |||| |||||||||| ||||    
T  2740339 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 16327966 - 16327906
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||||    
T  16327966 tgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcat 16327906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 18520894 - 18520979
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| ||||||||||    
T  18520894 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33825359 - 33825424
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||||||| | || |||||||||||||| |||| |||| ||||| ||||    
T  33825359 tgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 10356698 - 10356638
Alignment:
Q  36 tcagatttttatgtgggtgtcaatggg-tatattgccacctaagtatgtttatgtatcata 95  Q
    |||||||||| |||||||||||||||| | |||||||||||||| |||| |||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcata 10356638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 42414312 - 42414404
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| |||||||||| ||| | || |||||||||||| |||||||||||| |||| ||||||||||||    ||| |||||||||| ||||||    
T  42414312 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactcat 42414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 35785264 - 35785198
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||  ||| |||||||||| |||||    
T  35785264 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 35785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 40145497 - 40145403
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatat 103  Q
    |||| ||||||||||  || | || |||||||||||| ||||| ||| || |||| ||||||||||||||  ||| |||||||||| ||||||||    
T  40145497 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactcatat 40145403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 35943927 - 35943992
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||||||||||||  | | ||||||||||||||  ||| |||||||||||||||    
T  35943927 tgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 36732977 - 36733042
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||| |||||||  ||| |||||||||| ||||    
T  36732977 tgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 33149673 - 33149741
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    ||||| |||||| |||||||||||| |||| |||| |||||||||  ||| |||||||||| |||||||    
T  33149673 tgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcata 33149741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 9603896 - 9603813
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||  |||||||||||| ||| ||||| |||| || ||||  |||||||| |||| |||||||||| ||||    
T  9603896 ggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactc 9603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  40 atttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||| |||||||||||| |||| ||||||||||||||  ||| ||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 31009053 - 31008988
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||  | |  | ||||| |||||||| ||||||||||||||||||||    
T  31009053 tgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactc 31008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15508026 - 15508125
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  15508026 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 15990044 - 15990142
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  15990044 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30341362 - 30341460
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  30341362 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 4231646 - 4231547
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||| |||||||| ||| |||| |||||||||||||  ||||||||| |||||||||||    
T  4231646 aaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactca 4231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 31976338 - 31976248
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||| ||| || |||| |||||||||||| ||||||||| || ||||||||||||||||||| |||| |||||||||||||||    
T  31976338 cttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 31953061 - 31953132
Alignment:
Q  30 cacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||| |||||| ||||||    
T  31953061 cacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactcat 31953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 28536521 - 28536581
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||||| |||||||||||| || | |||||||||||||| |||||||||||||||    
T  28536521 tgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 12732553 - 12732482
Alignment:
Q  28 gccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||||||||| ||||||||||||||  ||||||||||| |||| |||| |||||||||| ||||    
T  12732553 gccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactc 12732482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 32869768 - 32869675
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||| | |||||||    
T  32869768 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactcata 32869675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31110779 - 31110859
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||| |||  || ||||||||||||  ||| ||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  31110779 gggtccatgtggttacgtgtcagattttt--gtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 31110859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 22880668 - 22880753
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||| ||||||||||  || | || ||||||| |||| |||||||||||| |||| ||||||||||||||  ||| ||||||||||    
T  22880668 cttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 17598644 - 17598552
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||||||  || | || |||||||||||| ||||||||||||  | | ||||||||||||||  ||| |||||||||| ||||||    
T  17598644 cttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactcat 17598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 11427683 - 11427639
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    |||||||||||| |||||||||||| || | ||||||||||||||    
T  11427683 tgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaag 11427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 31109435 - 31109479
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||    
T  31109435 tgtcagatttttgtgtggatgtcaaagggtgtattgccacctaag 31109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 45058555 - 45058653
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  45058555 aaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36331331 - 36331407
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaa 77  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||    
T  36331331 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 26141549 - 26141635
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    ||||||||| || |||| |||||||||||| ||||||||| || |||| |||||||||||||| |||| ||||||||||||||||||    
T  26141549 ggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcata 26141635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 41189774 - 41189864
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||||||  | | |||||||||||||| |||| |||||||||||||||    
T  41189774 cttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 14623870 - 14623939
Alignment:
Q  30 cacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| ||||    
T  14623870 cacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 42823209 - 42823104
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||||||||||| |||| |||| |||| |||   |||||||||||||||| ||     
T  42823209 aaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtttatgtatcataattcc 42823110  T
Q  101 tataat 106  Q
    ||||||    
T  42823109 tataat 42823104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 13898090 - 13898150
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||    
T  13898090 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 53982101 - 53982006
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatata 104  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| |||||||||    
T  53982101 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcatata 53982006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 11347940 - 11348022
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||| ||||||| |||||||||||| ||||| |||||| || | ||||| |||||||| |||| |||||||||||||||    
T  11347940 gggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 20764931 - 20765016
Alignment:
Q  15 cggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||| ||||||| |||||||||||| ||||||||| || | || |||| ||||||||| |||| ||||| ||||||||||    
T  20764931 cggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 26754785 - 26754698
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataa 96  Q
    |||| ||||||||||| || ||||||||||||||||| ||||| |||| | |||| ||||||||||||||  ||| |||| |||||||    
T  26754785 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcataa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 11907461 - 11907371
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||||||||| ||||||||||||||||| |||| ||||  | | || ||||| ||||||||  ||| |||||||||||||||    
T  11907461 cttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 24699972 - 24700054
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||  ||||||| || ||||||||||||||||||||||  ||| |||||||| ||||| |||| |||||||||| ||||    
T  24699972 gggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 47531955 - 47531865
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||| ||||||||||| ||||||||| || ||||| ||| ||  ||| |||||||| ||||| |||| |||||||||||||||    
T  47531955 cttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 51419370 - 51419460
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||| || ||||||| |||||||||||| ||||||||| || || | ||||| || ||||| |||| |||||||||||||||    
T  51419370 cttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 11095388 - 11095453
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  11095388 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 35536707 - 35536626
Alignment:
Q  18 ggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||| ||| |||| ||||| |||||||||||||||||||  ||| ||||||||| |||| |||| |||||||||| ||||    
T  35536707 ggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 49607479 - 49607414
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  49607479 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 52629365 - 52629304
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcata 95  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||||    
T  52629365 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 25395350 - 25395429
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcata 95  Q
    |||||| |||| |||||||||||||||||| ||||||| | || || | ||| ||||| |||| ||||||||||||||||    
T  25395350 ggggtctatatagccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcata 25395429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 33644290 - 33644199
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| |||||||||| |||  ||| |||||||||| |||||    
T  33644290 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactca 33644199  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 8076483 - 8076393
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || ||| |||||||| |||||||||||| |||| || |||||||||||  |||||||||||||| ||||    
T  8076483 cttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 27714901 - 27714991
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||||| ||| | || |||||||||||| |||||||||||| |||| |||| ||||||||   ||| |||||||||| ||||    
T  27714901 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactc 27714991  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 36331408 - 36331478
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||| ||||||||| ||||| |||||| ||||  ||||||| |||||  |||||||||||||||||||    
T  36331408 ccacatgccagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactc 36331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 8956827 - 8956762
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| ||||||||||||||||||| || | ||||||||| |||| |||| |||||||||| ||||    
T  8956827 tgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactc 8956762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 31456779 - 31456694
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||| |||||||||| ||| | || |||||||||||| |||||||||||| |||| ||||||| |||| |  ||| ||||||||||    
T  31456779 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 33118886 - 33118951
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||| |||| ||||| ||||||||  ||| |||||||||||||||    
T  33118886 tgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48587093 - 48587170
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    ||||| |||||| ||||| ||||  || | || |||||||||||||||| |||||||| |||| ||||||||||||||    
T  48587093 aaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaag 48587170  T

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Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 54868930 - 54868995
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||  ||| |||||||||| ||||    
T  54868930 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 30801750 - 30801828
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||||| | |||||||| |||||| ||||||| |||| |||| ||||  ||||||||  ||| ||||||||||    
T  30801750 ggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 35965804 - 35965874
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||||||||||||||||| || | ||||  ||| |||| |||| |||||||||| ||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactc 35965874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 50591002 - 50591101
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  50591002 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 50591101  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41608495 - 41608594
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  41608495 aaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactca 41608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47748540 - 47748441
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||  | ||||||||||||||||||    
T  47748540 aaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaa-gggtgtattgccacctaagggtatttatgtatcataactca 47748442  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5959002 - 5959100
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||  ||| ||||||||| ||||  |||||||||||||||||||    
T  5959002 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 32813337 - 32813247
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||| || |||| |||||||||||| ||||||||| || |||| |||||||||||||| |||| |||||||||||||||    
T  32813337 cttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44332373 - 44332430
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaa 58  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  44332373 aaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaa 44332430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3000384 - 3000319
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||| ||||    
T  3000384 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 45044575 - 45044660
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||| |||| ||||||||||||||| | ||||||||||  ||| |||||||||||||| |  | |||||||||||||||    
T  45044575 gcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactc 45044660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 27564770 - 27564838
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||||||||||| ||||||||||||  ||| |||||||||||||| |||| |||||||||| |||||||    
T  27564770 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactcata 27564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 2582005 - 2581915
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  2582005 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 9474911 - 9474977
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| |||||    
T  9474911 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 9474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 37926440 - 37926538
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| ||||||  |||| ||||| ||||||| |||||||||||||||||||||| ||  | | |||||||||||||  || | |||||||||||||||    
T  37926440 aaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 23597118 - 23597191
Alignment:
Q  26 tggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||| |||||||||||||||||||| |||| | || |||||||||||||  |||| |||||||||| ||||    
T  23597118 tggccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactc 23597191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 38595219 - 38595154
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||||||||   |||||||||||||| ||||    
T  38595219 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 51898718 - 51898783
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||||||||  |||| |||||||||| ||||    
T  51898718 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 26440819 - 26440727
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatataat 106  Q
    ||||| ||||| ||||||| |||||||||||| ||||||||| || |||| ||||| || ||||| |||| ||| |||| |||||||| ||||    
T  26440819 gcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaactcatttaat 26440727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 37649268 - 37649196
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| |||||||||||| |||||||||||| | || |||||||||||||  |||| |||||||||| ||||||    
T  37649268 ccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactcat 37649196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 6260955 - 6260868
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    ||||||||||  || |||||||| ||||||||||||||||||  | |||| |||| ||||||||| || | ||| |||||||||||||    
T  6260955 gcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataactcat 6260868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 49811537 - 49811632
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatata 104  Q
    |||| |||| ||| ||||||| || |||||||||||| ||||| ||||||  ||| ||||| |||||||| |||| ||| ||||||||||| ||||    
T  49811537 cttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactcttata 49811632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 3302550 - 3302636
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    ||||||||||||   || |||||||||||| |||||||||| | |  ||||||| |||||||| |||| |||||||||| |||||||    
T  3302550 ggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattactcata 3302636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 7740816 - 7740733
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||| || ||||| ||||| |||||||||| ||||||||||| | ||||| ||| ||||  |||  ||||||||||||||    
T  7740816 ggggtccacatagccacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactc 7740733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 47452359 - 47452422
Alignment:
Q  38 agatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||| |||||||||||| |||| |||| |||||||||  ||| |||||||||| ||||||    
T  47452359 agatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcat 47452422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 48716292 - 48716383
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||  || | || |||||||||||| ||||| ||||||  ||| ||||||||||||||  ||| |||||||||| |||||    
T  48716292 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 44548386 - 44548471
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||| ||||||||||  || | || |||||||||||| ||||||| ||||  ||| |||||||||||||  |||| ||||||||||    
T  44548386 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8343165 - 8343263
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||| ||||||||||||||||||||    
T  8343165 aaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19670718 - 19670816
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  19670718 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 55475273 - 55475191
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  55475273 gggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29547961 - 29548059
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||| |||||||||||| || | |||||||||||||| ||||||||||||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32767056 - 32766958
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| || ||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  32767056 aaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47986306 - 47986208
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||||  |||||||||||||||||||    
T  47986306 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 47986208  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50813894 - 50813992
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| ||||||| |||||| ||||||||||||||||| |||||||||||| |||| |||| |||||||||  |||||||||||||||||||    
T  50813894 aaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17983745 - 17983822
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  17983745 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 17983822  T

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Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 55079731 - 55079814
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||||||||||||||||||||| | ||||||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  55079731 ggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18924497 - 18924598
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||| |||| || ||||| |||||||||||||||||| ||||| | |||| |||| ||||||||||||||  | |||||| |||||||||||    
T  18924497 aaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactca 18924596  T
Q  101 ta 102  Q
    ||    
T  18924597 ta 18924598  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 11511472 - 11511563
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||  || | || ||||||||||||||||||||||||| |||| ||||||||||||||  ||| |||||||||| |||||    
T  11511472 cttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 11511563  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 31910282 - 31910191
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||| |||| |  |||||||||||| |||||||||||| | || ||||| |||||||| |||| ||||||||||||||||    
T  31910282 cttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactca 31910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 40574844 - 40574777
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||||||| |||||||||||| |||| |||| ||||||||| |||| |||||||||||||||||    
T  40574844 tgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactcat 40574777  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 44536763 - 44536845
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||| ||||| ||||||||||||||||| ||||| |||||| |||| |||||||||||||   |||||||||||||||||||    
T  44536763 ggggtctatatgaccacatgtcagatttttgtgtggatgtcaa-gggtgtattgccacctaaaagtgtttatgtatcataactc 44536845  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29589742 - 29589831
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtat 91  Q
    ||||| |||||| | ||||||||||||||||||| |||||||||| |||||||||||| |||| ||||| || |||||  |||||||||||    
T  29589742 aaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtttatgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 50052438 - 50052528
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| |||||||||||||| |||| |||||||||| ||||    
T  50052438 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 50052528  T

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Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 6034112 - 6034043
Alignment:
Q  31 acatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| |||||    
T  6034112 acatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 6034043  T

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Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 50526201 - 50526272
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| |||||||||||| |||||||||||| |||| |||||||||||||  |||| |||||||||| |||||    
T  50526201 ccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactca 50526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 48183059 - 48183154
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatata 104  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||| ||||  ||| |||||||||| |||| ||||    
T  48183059 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactcttata 48183154  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 480482 - 480547
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| ||||| ||||||||  ||| |||||||||| ||||    
T  480482 tgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 29977968 - 29977908
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccaccta 76  Q
    |||||||||||| | || |||||||||||| ||||||||| || |||| ||||||||||||    
T  29977968 ggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 3481719 - 3481652
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||||||| |||||||||||| | || |||||||||||||   ||| |||||||||| ||||||    
T  3481719 tgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactcat 3481652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 41236437 - 41236347
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| ||||| ||||||  ||| ||||||||||||||  ||| |||||||||| ||||    
T  41236437 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 48647756 - 48647826
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||| |||||||||||||||||| ||  ||| |||||  ||||||| |||||||||| |||||||||    
T  48647756 ccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatgtgtcataactc 48647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 24995117 - 24995186
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    |||| ||||||||||  || | || ||||| ||||||||||||||||||| |||| |||||||| |||||    
T  24995117 cttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaag 24995186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 43490219 - 43490119
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactca 43490120  T
Q  101 t 101  Q
    |    
T  43490119 t 43490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45097737 - 45097835
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||| || | |||||||||||||| ||||||||||||||||||||    
T  45097737 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13365451 - 13365351
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaa--gtatgtttatgtatcataact 98  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||  || ||||||||||||||||||    
T  13365451 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgtgtttatgtatcataact 13365352  T
Q  99 c 99  Q
    |    
T  13365351 c 13365351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 40613912 - 40614004
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||||||| ||||||| |||||||||||| |||||||||||| |||| |||||||||||||| |||| |||||||||||||||||    
T  40613912 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactcat 40614004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2997489 - 2997566
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaag 78  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  2997489 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaag 2997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38732452 - 38732354
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||| || | ||||| ||| ||||  |||||||||||||||||||    
T  38732452 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 42257283 - 42257193
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||  | | |||||||||||||  |||| |||||||||||||||    
T  42257283 cttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 38273157 - 38273251
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcatataattt 108  Q
    ||||||||||| |||| || |||||||||||| ||||||||| || |||| |||||||| ||||| |||| ||||||||||||||| | ||||||    
T  38273157 gcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactcttttaattt 38273251  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 9058570 - 9058480
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||||| ||| | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  9058570 cttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 15428766 - 15428840
Alignment:
Q  25 atggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||| |||| |||| || |||| ||| ||||| |||| ||||||||||||||||||||    
T  15428766 atggccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactc 15428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 5574523 - 5574588
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  5574523 tgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 17820034 - 17820105
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccaccta-agtatgtttatgtatcataactca 100  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||| ||| ||| ||||||||||||||||    
T  17820034 ccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagt-tgtctatgtatcataactca 17820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 33436291 - 33436211
Alignment:
Q  19 gtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||| ||| |||||||||||||||||||||||||  ||| |||||||| ||||| |||| |||||||||| ||||    
T  33436291 gtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 26891534 - 26891604
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||| |||||||||| | |||| ||||||||||||||  ||  |||||||||||||||    
T  26891534 ccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36168934 - 36168836
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||| |||| ||||||||||| ||||||| ||||| |||||| |||||| || || || | ||||| || ||||| |||| |||||||||||||||    
T  36168934 aaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 28863545 - 28863460
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||||||||||||  ||| ||||||||||    
T  28863545 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 30915528 - 30915463
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  30915528 tgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3034985 - 3035029
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagattttt 45  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  3034985 aaagtatacttgtgcggggtccatatgaccacatgtcagattttt 3035029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 19930835 - 19930915
Alignment:
Q  14 gcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||| ||| | || |||||||||||| ||||| |||||| |||| ||||||||||||||  ||| ||||||||||    
T  19930835 gcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 2533213 - 2533124
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||| || |||| || |||||||||||| ||||| |||||| || | ||||||||| |||| |||| |||||||||||||||    
T  2533213 cttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 33436110 - 33436200
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || ||| |||||||| |||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  33436110 cttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 40701543 - 40701477
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||  ||| |||||||||| |||||    
T  40701543 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 7465770 - 7465835
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||| |||||  ||| |||||||||| ||||    
T  7465770 tgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 17473085 - 17473020
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| |||| |||||||| |||||  ||| |||||||||| ||||    
T  17473085 tgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 28381665 - 28381758
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||| |||| |||||| || | || |||||||||||| |||||||||| |  ||| ||||||||||||||  ||| |||||||||| |||||||    
T  28381665 cttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactcata 28381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 13438433 - 13438341
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| || | ||||| ||||||||  ||| |||||||||| ||||||    
T  13438433 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactcat 13438341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 3738033 - 3737986
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtc 56  Q
    |||| |||||||||| ||| ||||||||||||||||| ||||||||||    
T  3738033 cttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 27864769 - 27864702
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||||||| ||||| |||||| |||| ||||||||| ||||  ||| |||||||||| ||||||    
T  27864769 tgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactcat 27864702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 10249392 - 10249482
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| ||||||||||||  ||| ||||| ||||||||  ||| |||||||||| ||||    
T  10249392 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 32505658 - 32505748
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| ||||||||||||  ||| ||||| ||||||||  ||| |||||||||| ||||    
T  32505658 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 20700880 - 20700815
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||| || ||||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  20700880 tgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 38882849 - 38882913
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||||| |||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  38882849 tgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 32564428 - 32564527
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  32564428 aaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactca 32564527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22343459 - 22343361
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  22343459 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41915839 - 41915741
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  41915839 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38044295 - 38044197
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||| ||||| |||||| |||| ||||||||||||||  |||||||||||||||||||    
T  38044295 aaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8238311 - 8238210
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccaccta-agtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||| | ||||||||||||||| |||||||||||| |||| |||||||||||| ||  |||||||||||||||||||    
T  8238311 aaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T
Q  100 at 101  Q
    ||    
T  8238211 at 8238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7728004 - 7727906
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||  ||||||  ||| |||| |||||||||  |||||||||||||||||||    
T  7728004 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactc 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 26296734 - 26296644
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||||||||||| | |||||||||||||||| ||| || |||||||||| |||||||| |||| |||||||||||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40846115 - 40846213
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| || ||| |||||||||||||  | |||||| |||||||| ||||| |||||| |||| |||||||||||||| ||||||||||||||||||||    
T  40846115 aaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 46374812 - 46374902
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||| ||||||| |||||||||||| ||||||||| || |||| | |||||||||||| |||| |||||||||||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 35522966 - 35522877
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataact 98  Q
    |||| ||||| ||||||||||||| |||||||||||| ||||||||| ||  ||| ||||||||| |||| |||| ||||||||||||||    
T  35522966 cttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 46033831 - 46033901
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| |||||||||||||||||||||| || |||| |||||||||||||| || | |||||||||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 21234491 - 21234399
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||| ||||||| ||| |||| || ||||| |||||| |||| ||||||| |||| ||||| |||||||| |||| |||||||||||||||||    
T  21234491 cttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactcat 21234399  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 19329907 - 19329840
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||||||| ||||||||||||  ||| |||||||||||||| |||| |||||||||| ||||||    
T  19329907 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactcat 19329840  T

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Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 8080393 - 8080483
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||||||| |||||||| |||| ||||||||||||||  ||| |||||||||| ||||    
T  8080393 cttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 3434627 - 3434562
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||| ||||| |||||||||||| |||| |||||||||||||| |||| |||||||||| ||||    
T  3434627 tgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactc 3434562  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 7389479 - 7389389
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| | || ||||||||||||||  ||| |||||||||| ||||    
T  7389479 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 35468873 - 35468955
Alignment:
Q  17 gggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||| |||| ||||| | |||||||||||||||||||||  | | |||||||| ||||| |||| |||||||||| ||||    
T  35468873 gggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactc 35468955  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 36208243 - 36208173
Alignment:
Q  29 ccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||||||||| ||||| ||||||||||||||  | |||| |||||||||  ||| |||||||||||||||    
T  36208243 ccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactc 36208173  T

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Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19436222 - 19436287
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||||||||||||  ||| ||||| |||||||| |||| |||||||||| ||||    
T  19436222 tgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactc 19436287  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 36361948 - 36362013
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| || | ||||||||||||||  ||| |||||||||| ||||    
T  36361948 tgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 39255952 - 39256024
Alignment:
Q  28 gccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    ||||| |||||||||||| | ||||| ||||  ||| ||||||||||||||  ||| ||||||||||||||||    
T  39255952 gccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactca 39256024  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 18207251 - 18207180
Alignment:
Q  28 gccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    ||||| ||| |||||||| | ||||||||||  ||| ||||||||||||||  ||| |||||||||||||||    
T  18207251 gccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactc 18207180  T

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Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 35137594 - 35137531
Alignment:
Q  38 agatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    |||||||| |||||||||||| |||| ||||||||||||||  ||| ||| |||||| ||||||    
T  35137594 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactcat 35137531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 38267130 - 38267039
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactca 100  Q
    |||| ||||||||||  || | || |||||||||||| |||||||||||| |||| ||||| ||| ||||  ||| |||||||||| |||||    
T  38267130 cttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 31735936 - 31735882
Alignment:
Q  47 tgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcat 101  Q
    ||||||||| || | || |||||||||||||| |||| |||||||||||||||||    
T  31735936 tgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactcat 31735882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 32045920 - 32045842
Alignment:
Q  16 ggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||| ||||||  || ||||||||||||||||||||||| |    |||||||||||||||| || | ||||||||||    
T  32045920 ggggtctatatggttacgtgtcagatttttatgtgggtgtccagtaatatattgccacctaagaatatatatgtatcat 32045842  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 36362091 - 36362026
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| |||||||||||| || | |||| |||||||||  ||| |||||||||| ||||    
T  36362091 tgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 40957772 - 40957707
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||| ||||||| |||| | || ||||||||||||||  ||| |||||||||| ||||    
T  40957772 tgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 3784060 - 3784000
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcat 94  Q
    |||||||||||| ||||||||||||  | | ||||||||||||||  ||| ||||||||||    
T  3784060 tgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 152596 - 152523
Alignment:
Q  1 aaagtatacttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacc 74  Q
    ||||| || ||| ||||| |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||    
T  152596 aaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacc 152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 10144 - 10209
Alignment:
Q  34 tgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactc 99  Q
    |||||||||||||||||| |||||| || | |||||||||||||   ||| |||||||||||||||    
T  10144 tgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactc 10209  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 17144 - 17055
Alignment:
Q  9 cttgcgcggggtccatatggccacatgtcagatttttatgtgggtgtcaatgggtatattgccacctaagtatgtttatgtatcataactcata 102  Q
    |||| ||||||||||| || ||||||||||||||||| ||||| |||| | || | |||||| |||    ||||| |||| |||||||||||||    
T  17144 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaacc----tatgtctatgaatcataactcata 17055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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