View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_16 (Length: 497)
Name: NF11880_low_16
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 39074864 - 39075251
Alignment:
| Q |
19 |
catcaacgttcggaaccttcgttggagatactccaaggtttgcaaaatcaagcaagaaaataattgaatatcctatgtgccatatcaaacaaatgtttga |
118 |
Q |
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| T |
39074864 |
catcaacgttcggaaccttcgttggagatactccaaggtttgcaaaatcaagcaagaaaataattgaatatcctatgtgccatatcaaacaaatgtttga |
39074963 |
T |
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| Q |
119 |
gtgacatcaatagaccgaaccacaacatatggtttggtttggttcaaaattggcttttgtttctttctttatggttgagttttgactactaagttttacg |
218 |
Q |
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| T |
39074964 |
gtgacatcaatagaccgaaccacaacatatggtttggtttggttcaaaattggcttttgtttctttctttatggttgagttttgactactaagttttacg |
39075063 |
T |
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| Q |
219 |
tgacatgtgagacnnnnnnnnnacggaatgtatcagttttgttgnnnnnnnacgtaagtcttgtagctgacgtacgtttgagttacttcaaacacgcagg |
318 |
Q |
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| T |
39075064 |
tgacatgtgagactttttttttacggaatgtatcagttttgttgtttttttacgtaagtcttgtagctgacgtacgtttgagttacttcaaacacgcagg |
39075163 |
T |
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| Q |
319 |
tccatatttgttttcaagaaacttcttgttttggtcacacagttctgtttgtagtatggtttgttttgggactaatctgattacattt |
406 |
Q |
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| T |
39075164 |
tccatatttgttttcaagaaacttcttgttttggtcacacagttctgtttgtagtatggtttgttttgggactaatctgattacattt |
39075251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 39075248 - 39075304
Alignment:
| Q |
428 |
atttgtcccttcatatggctgactattttatagtgtgaaccatgtttctgatgtcca |
484 |
Q |
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| T |
39075248 |
atttgtcccttcatatggctgactattttatagtgtgaaccatttttccgatgtcca |
39075304 |
T |
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