View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_2 (Length: 1444)
Name: NF11880_low_2
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 1308; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 1308; E-Value: 0
Query Start/End: Original strand, 8 - 1425
Target Start/End: Original strand, 34841887 - 34843298
Alignment:
| Q |
8 |
agaagcagagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaagaaggagaatatgatgatgaggaggaagag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34841887 |
agaagcagagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaagaaggagaatatgatgacgaggaggaagag |
34841986 |
T |
|
| Q |
108 |
gagcaagatcatgcttatgaataaaaaatattactaaaatgattgttcttgcttatgcaatatggtatatgatgcataagtgtgtttagtagtattcctc |
207 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34841987 |
gagcaagatcatgcttatgaataaaagatattactaaaatgattgttcttgcttatgcaatatggtatatgatgcataagtgtgtttagtagtattcctc |
34842086 |
T |
|
| Q |
208 |
tatcctttgtaattagcttgttttgagggattttagtatcgagctggatgtggagagaatggagatcccaatttggacaacagagcgaagggtagtggaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842087 |
tatcctttgtaattagcttgttttgagggattttagtatcgagctggatgtggagagaatggagatcccaatttggacaacagagcgaagggtagtggaa |
34842186 |
T |
|
| Q |
308 |
atttagtacatggtttaaagtagatctctgcacccatctatttgtttctgtatgttggcttgcattgttgtttcttatatctgctattggattatgttac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842187 |
atttagtacatggtttaaagtagatctctgcacccatctatttgtttctgtatgttggcttgcattgttgtttcttatatctgctattggattatgttac |
34842286 |
T |
|
| Q |
408 |
cttaatagtttgtcattcctatgcatgactttttcacattggagtcttgaaatgtctgtgactgttattcaacgtgaagtctgggctgatatttgtgtcc |
507 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
34842287 |
cttaatagtttgtcattcctatgcacgactttttcacattggagtcttgaaatgtctgtgactgtgattcaacgtgaagtctggcctgatatttgtgtcc |
34842386 |
T |
|
| Q |
508 |
gaacaacgttaa-ccgcacatatatctattggctattggtgatgatgttttagacccaatttcaataaagatatctagaagtccttatgaaacaaatagg |
606 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
34842387 |
gaacaacgttaaaccgcacatatatctattggc-------gatgatgttttagacccaatttcaataaagatatccagaagtccttatgaaacaaatagg |
34842479 |
T |
|
| Q |
607 |
agtttatggtggatactagttagcttgttaaggttcttgtagatgcaccagttatataaataccgtgacagtttgtgcacatacaagtaacaaaccaaat |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34842480 |
agtttatggtggatactagttagcttgttaaggttcttgtagatgcaccagttatataaataccgtgacagtttgtgcacatacaagtaacaaaccaaat |
34842579 |
T |
|
| Q |
707 |
attgggtgtttgttgctacattaggaaatgaacaaaggagatacagacagtagtgaatgtttatttgagaggggtttgattttcttgttttcaatgctaa |
806 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34842580 |
attgggtgtttgttgctacagtaggaaatgaacaaaggagatacagacagtagtgaatgtttatttgagaggggtttgattttcttgttttcaatgctaa |
34842679 |
T |
|
| Q |
807 |
gattataaagagatgtattagaagagaatatgcagaaagccaaaataacacac-aatcacgatgctgaaggcatcaatgagattagggagctccctttcc |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842680 |
gattataaagagatgtattagaagagaatatgcagaaagccaaaataacacacgaatcacgatgctgaaggcatcaatgagattagggagctccctttcc |
34842779 |
T |
|
| Q |
906 |
ccaacatttgttctgaaaatatccccaaattcttatagtactatatcactaatgattggaaggatctagtatatcctactcagtctcacacatactagga |
1005 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842780 |
ccaacatttgttctgaaaatatccccaaattattatagtactatatcactaatgattggaaggatctagtatatcctactcagtctcacacatactagga |
34842879 |
T |
|
| Q |
1006 |
ggcaaaaacacatggccttaacccatataaataggataagagacaactaagcaagaaaataacaataagtggaatatgctagcattcttttttatgcttc |
1105 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34842880 |
ggcaaaaacacatggccttaactc--ataaataggataagagacaactaagcaagcaaataacaataagtggaatatgctagcattcatttttatgcttc |
34842977 |
T |
|
| Q |
1106 |
ttaacgaggaacaaaatccttcaagtaattgggcttggtgatagtcctcttaggggcggtccatattggttttggagtcatggccgattgttgtattgct |
1205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34842978 |
ttaacgaggaacaaaatccttcaagtaattgggcttggtgatagtcctcttaggggcggtccatattggttttggagtcatggccgattgttgtattgct |
34843077 |
T |
|
| Q |
1206 |
atcacacattcgaaaatcact-tttaggcaatcatggtttcgtacagataactgccgctactggtgagtgaacggcagttaactaccgtgagcgatagtt |
1304 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34843078 |
atcacacattcgaaaatcactctttaggcaatcatggtttcatacagataactgccgctactggtgagtgaacggcagttaactaccgtgagcgatagtt |
34843177 |
T |
|
| Q |
1305 |
aactttcattgggcattttcgtcagtttagagtacatgagagcaaaccatgggtgaataaacaacatttttccatacactaacaactctcccatgtgata |
1404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34843178 |
aactttcattgggcattttcgtcagtttagagtacatgagagcaaaccatgggtgaataaacaacatttttccatacgctaacaactctcccatgtgata |
34843277 |
T |
|
| Q |
1405 |
gattttccaaaatatatttgt |
1425 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
34843278 |
gattttccaaaatatatttgt |
34843298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 45452416 - 45452346
Alignment:
| Q |
9 |
gaagcagagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaaga |
79 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||||||||| ||||| ||||| ||||| |||||||| |
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|
| T |
45452416 |
gaagcagaaagcaacatgaatgaccttgtctcagagtaccagcaataccaagatgctactgcagatgaaga |
45452346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 11731848 - 11731782
Alignment:
| Q |
15 |
gagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaagaag |
81 |
Q |
| |
|
||||| ||||||||||| || || ||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
11731848 |
gagagtaacatgaatgatcttgttgctgagtaccagcaataccaggatgcaactgctgacgaagaag |
11731782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 38176992 - 38176926
Alignment:
| Q |
15 |
gagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaagaag |
81 |
Q |
| |
|
||||| ||||||||||| | ||| | ||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
38176992 |
gagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaag |
38176926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 5532825 - 5532886
Alignment:
| Q |
15 |
gagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatga |
76 |
Q |
| |
|
||||||||||||||||| || || ||||||| || |||||||| |||||||| |||||||| |
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|
| T |
5532825 |
gagagcaacatgaatgatctggttgctgagtatcaacagtaccaagatgccaccgctgatga |
5532886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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