View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_21 (Length: 450)
Name: NF11880_low_21
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 9155372 - 9155810
Alignment:
| Q |
1 |
caggtgctgataatcttatcccaatggaattggcactgaaaattgctagtaaaatcaaagctaaggagagatttgctatttatattgttttacct--gtg |
98 |
Q |
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| T |
9155372 |
caggtgctgataatcttatcccaatggaattggcactgaaaattgctagtaaaatcaaagctaaggagagatttgctatttatattgttttacctatgtg |
9155471 |
T |
|
| Q |
99 |
gccagaaggtgatcctaaatctggagctgtgcaagaaatccttttctggcaggtatgtgattatctaatgtcgaaatttatattagaattttggttgggt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9155472 |
gccagaaggtgatcctaaatctggagctgtgcaagaaatccttttctggcaggtatgtgattatctaatgtcaaaatttatattagaattttggttgggt |
9155571 |
T |
|
| Q |
199 |
cttaattaaccccacaaaattggcttctaaggagagtattgtctcccatttataaccactgctaaggccatattgctatgggactcccaacacatcccat |
298 |
Q |
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| T |
9155572 |
cttaattaaccccacaaaattggcttctaaggagagtattgtctcccatttataaccactgctaaggccatattgctatgggactcccaacacatcccat |
9155671 |
T |
|
| Q |
299 |
cacacccataattagatatctgaagcatggaatggggggtctgtcaacagatggcccaacggatttaggataacctgtaataccatcttaaaatttgcgt |
398 |
Q |
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| T |
9155672 |
cacgcccataattagatatctgaagcatggaatggggggtctgtcaacagatggcccaacggatttaggataacctgtaataccatcttaaaatttgcgt |
9155771 |
T |
|
| Q |
399 |
tggacttaaccctacaaaaccgacttgtaaagtgatgtc |
437 |
Q |
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| T |
9155772 |
tggacttaaccctacaaaaccgacttgtaaagtgatgtc |
9155810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 433
Target Start/End: Original strand, 3180998 - 3181027
Alignment:
| Q |
404 |
ttaaccctacaaaaccgacttgtaaagtga |
433 |
Q |
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| T |
3180998 |
ttaaccctacaaaaccgacttgtaaagtga |
3181027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 21344663 - 21344618
Alignment:
| Q |
350 |
tggcccaacggatttaggataacctgtaataccatcttaaaatttg |
395 |
Q |
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|||| ||||||| ||||||||| || |||||||||||||||||||| |
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| T |
21344663 |
tggctcaacggaattaggataagctctaataccatcttaaaatttg |
21344618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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