View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_22 (Length: 435)

Name: NF11880_low_22
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_22
NF11880_low_22
[»] chr4 (2 HSPs)
chr4 (1-108)||(27316320-27316428)
chr4 (115-155)||(6509856-6509896)
[»] chr3 (4 HSPs)
chr3 (109-191)||(28424311-28424393)
chr3 (386-428)||(28424587-28424629)
chr3 (246-312)||(28424448-28424513)
chr3 (108-155)||(45807043-45807090)
[»] chr8 (3 HSPs)
chr8 (110-191)||(23388234-23388315)
chr8 (246-312)||(23388367-23388433)
chr8 (382-428)||(23388503-23388549)
[»] chr7 (3 HSPs)
chr7 (382-428)||(42840951-42840997)
chr7 (108-187)||(42840750-42840830)
chr7 (115-155)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (116-155)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (108-155)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (109-155)||(17050398-17050444)
chr1 (109-155)||(51606914-51606960)
chr1 (123-155)||(38688643-38688675)
chr1 (123-155)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (106-142)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27316320 - 27316428
Alignment:
Q  1 acatgttgcaaacaatt-atgcagaggaccatcattcaatccttatctaagaatattagttacttatggtaagtaaatacatcatcaaagataaatagga 99  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||    
T  27316320 acatgttgcaaacaatttatgcagaggatcatcattcaatcctaatctaagaatattagttacttatagtatgtaaatacatgatcaaagataaatagga 27316419  T
Q  100 ttaaacata 108  Q
    |||||||||    
T  27316420 ttaaacata 27316428  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 6509896 - 6509856
Alignment:
Q  115 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  6509896 gtttagcctgggaaagcaaagttgcttcccagcatgggaaa 6509856  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 28424311 - 28424393
Alignment:
Q  109 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28424311 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctttttacctgcagctggcagtcatgacctg 28424393  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 28424587 - 28424629
Alignment:
Q  386 gctctccttctctgcatctttcttattgttcctcttctctgct 428  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  28424587 gctcttcttctctgcatctttcttattgttcctcttctctgct 28424629  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 28424448 - 28424513
Alignment:
Q  246 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 312  Q
    ||||||||||||||| |||||||||||||| | || ||||| ||||||| ||||||||||| |||||    
T  28424448 gactttgcattctcagagaacaaatgactcatttg-tgtcataatcctactccaattgcacgctgtt 28424513  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 45807090 - 45807043
Alignment:
Q  108 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    |||||| ||||||  ||||||||||||||||||||| |||||||||||    
T  45807090 aggtggggtttagaatgggaaagcaaagttgtttcctatgatgggaaa 45807043  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 23388234 - 23388315
Alignment:
Q  110 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaactttgctctttacctgcagctggcagtcatgacctg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  23388234 gtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaaatttgctttttacctgcagctggcagtcctgacctg 23388315  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 23388367 - 23388433
Alignment:
Q  246 gactttgcattctcaaagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 312  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23388367 gactttgcattctaagagaacaaatgactcgtctgttgtcacaatcctaatccaattgcacactgtt 23388433  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 23388503 - 23388549
Alignment:
Q  382 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 428  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  23388503 ctcagctcttcttctctgcatctttcttattgttcctcttccctgct 23388549  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 42840951 - 42840997
Alignment:
Q  382 ctcagctctccttctctgcatctttcttattgttcctcttctctgct 428  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  42840951 ctcagcttttcttctctgcatctttcttattgttcctcttctctgct 42840997  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 42840750 - 42840830
Alignment:
Q  108 aggtggcgtttagcctgggaaagcaaagttgtttcc-catgatgggaaactttgctctttacctgcagctggcagtcatga 187  Q
    |||||||||| || | ||||||| ||||||||||   ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  42840750 aggtggcgttaagtcggggaaagtaaagttgttttttcatgatgggaaactttgctttttacctccagttggcagtcatga 42840830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 40740666 - 40740706
Alignment:
Q  115 gtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  40740666 gtttagcatgggaaaggaaaattgtttcccatgatgggaaa 40740706  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 6151 - 6112
Alignment:
Q  116 tttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  6151 tttagcctgggaaaccaaagttgtttcccatgatgggaaa 6112  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 10021004 - 10021051
Alignment:
Q  108 aggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||    
T  10021004 aggtgccgtttagcctgggaaaacaaactagtttcccatgatgggaaa 10021051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 17050444 - 17050398
Alignment:
Q  109 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    ||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  17050444 ggtggagtttagcttgggaaatgaaagttgtttcccatgatgggaaa 17050398  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 51606914 - 51606960
Alignment:
Q  109 ggtggcgtttagcctgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    ||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  51606914 ggtggagtttagcatgggcaaggaaagttgtttcccatgatgggaaa 51606960  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 38688675 - 38688643
Alignment:
Q  123 tgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    |||||||| ||||||||||||||||||||||||    
T  38688675 tgggaaagaaaagttgtttcccatgatgggaaa 38688643  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 49420098 - 49420130
Alignment:
Q  123 tgggaaagcaaagttgtttcccatgatgggaaa 155  Q
    |||||||| ||||||||||||||||||||||||    
T  49420098 tgggaaaggaaagttgtttcccatgatgggaaa 49420130  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 44094086 - 44094122
Alignment:
Q  106 ataggtggcgtttagcctgggaaagcaaagttgtttc 142  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  44094086 ataggtggcatttagcctgggaaatcaaagttgtttc 44094122  T

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