View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_23 (Length: 405)
Name: NF11880_low_23
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 21379347 - 21379652
Alignment:
| Q |
17 |
aggaataatgtggttgttccgaagattagttttgtctttggtggtggtgtcaccgtggagcttggtgcacacggagtacttttcactgtgagttcgaggc |
116 |
Q |
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| T |
21379347 |
aggaataatgtggttgttccgaagattagttttgtctttggtggtggtgtcaccgtggagcttggtgcacacggagtacttttcactgtgagttcgaggc |
21379446 |
T |
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| Q |
117 |
aagtttgtttggcatttgcagcgaatagagatgatagttatatcactatctttgggaatgtgcaacaaagaacactagaagttgtttatgatgttggtgg |
216 |
Q |
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| T |
21379447 |
aagtttgtttggcatttgcagcgaatagagatgatagtgatattactatctttgggaatgtgcaacaaagaacactagaagttgtttatgatgttggtgg |
21379546 |
T |
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| Q |
217 |
tggtaagattggatttggaccaaatggttgcaagtgaacatagttttgaatattttgatcaacgattcattcttatttgaacacatacatatatccaatt |
316 |
Q |
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| T |
21379547 |
tggtaagattgggtttggaccaaatggttgcaagtgaacatagttttgaatattttgatcaacgattcattcttatttgaacaaatacatatatccaatt |
21379646 |
T |
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| Q |
317 |
aatcaa |
322 |
Q |
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| T |
21379647 |
gatcaa |
21379652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 106 - 356
Target Start/End: Original strand, 21406076 - 21406326
Alignment:
| Q |
106 |
gagttcgaggcaagtttgtttggcatttgcagcgaatagagatgatagttatatcactatctttgggaatgtgcaacaaagaacactagaagttgtttat |
205 |
Q |
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| T |
21406076 |
gagtttgaagcaagcttgtttggcgtttgcgccaaatggagatgatagtgatattactatctttggaaatgtgcaacaaagaacattagaggttgtttat |
21406175 |
T |
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| Q |
206 |
gatgttggtggtggtaagattggatttggaccaaatggttgcaagtgaacatagttttgaatattttgatcaacgattcattcttatttgaacacataca |
305 |
Q |
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| T |
21406176 |
gatgttggtggtggtaagattgggtttggaccaaatggttgcaagtgaacatagttttgaatattttgatcaacgattcattcttatttgaacacataca |
21406275 |
T |
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| Q |
306 |
tatatccaattaatcaagcaacatggaaaatacattaaactaattgtattt |
356 |
Q |
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| T |
21406276 |
tatatccaattaatcaagcaaaatgaaaaatacattaaaacaattgtattt |
21406326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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