View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11880_low_25 (Length: 351)
Name: NF11880_low_25
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10050715 - 10050955
Alignment:
| Q |
1 |
cgagctgatggagctgctggctccatttttgatgtcaaacacctggcgagttcttctacgtctggtaaatctttatacatcgagtcaacttactaacagt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
10050715 |
cgagctgatggggctgctggctccatttttgatgtcaaacatctgtcgagttcttctacgtctggtaaatctttatacatcgagtaaacttaccaacagt |
10050814 |
T |
|
| Q |
101 |
tagtggccctgttaatgtttttctttaagaattaagataaaccaccaatctaatgtcatgtcattgcacaaagtagtcacattctgtctagcacaataga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
10050815 |
cagtggccttgttaatgtttttctttaagaattaagataaaccaccactctcctgtcatggcattgcataaagtagtcacattctggctagcagaataga |
10050914 |
T |
|
| Q |
201 |
aacatatata---tgaaattatactttttactagtttcagt |
238 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
10050915 |
aacatatatacatggaaattatgctttttactagtttcagt |
10050955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 10050952 - 10051027
Alignment:
| Q |
261 |
cagtgaagaatgaatgtatagatagtccaggaacaaattaatatcaaaaagaatgtgaagcctccaaatgattcttg |
337 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10050952 |
cagtgaagaat-aatgtatagatagtccaggaacaaattaatttcaaaaagaatgtgaagcttccgaatgattcttg |
10051027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University