View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_27 (Length: 334)
Name: NF11880_low_27
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 4380640 - 4380949
Alignment:
| Q |
10 |
atgagatgaatgtaaaatagtaaatcatatcaaataaatcaaattatagatgatcaaggttaaaaaacgagtctataacattatttaagtactattgtac |
109 |
Q |
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| T |
4380640 |
atgagatgaatgtaaaatagtaaatcatatcaaataaatcaaattatagatgatcaaggttaaaaaacgagtctataacattatttaagtactattgtac |
4380739 |
T |
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| Q |
110 |
taatgtgatta---aataatttttcatctacattattgtttaattggatgaacaaattttatacctataatgattttattgtttatcaaactctatttgt |
206 |
Q |
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| T |
4380740 |
taatgtgattattaaataatttttcatctacattattgtttaattggatgaacaaattttatacctataatgattttattgtttatcaaactctatttgt |
4380839 |
T |
|
| Q |
207 |
ggtttgtgtagtgtaatataggacaggaggaggagtgttatggcaaaaatgccaaatgaggttccaaaagttgtaaggtactagacttattaaacacaaa |
306 |
Q |
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| T |
4380840 |
ggtttgtgtagtgtaatataggacagaaggaggagtgttatggcaaaaatgccaaatgaggttccaaaagttgtaaggtactagacttattaaacacaaa |
4380939 |
T |
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| Q |
307 |
gtatagtaaa |
316 |
Q |
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|||||||||| |
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| T |
4380940 |
gtatagtaaa |
4380949 |
T |
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