View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_28 (Length: 327)
Name: NF11880_low_28
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 33869909 - 33870214
Alignment:
| Q |
19 |
tttctttactttttctcatttgttcacacaggttgctgtagatccaaagaaatttataggcctgcattctgttgctgatgctgttgagtatctccattca |
118 |
Q |
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| T |
33869909 |
tttctttactttttctcatttgttcacacaggttgctgtggatccaaagaaatttataggcctgcattctgttgctgatgctgttgaatatctccattca |
33870008 |
T |
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| Q |
119 |
ggcaaaagcgtcgggaaggtaattttctttcttatgaaattctgcacagtgctattttgatattgtaattgttgtgtaacaatctaattatatcatttct |
218 |
Q |
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| T |
33870009 |
ggcaaaagcgtcgggaaggtaattttctttcttatgaaattctgcacagtgctattttgattttgtaattgttgtgtaacaatctaattatatcatttct |
33870108 |
T |
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| Q |
219 |
ctaggtggttgtctgcgtggatccaaccttcgttaatcaagttgccaaattatgagttaacacatgacaaatacagaaagaagtcaagttttgagctcat |
318 |
Q |
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| T |
33870109 |
ctaggtggttgtctgcgtggatccaaccttcgttaatcaagttgccaaattatgagttaacacatgacaaatacagaaagaagtcaagttttgagctcat |
33870208 |
T |
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| Q |
319 |
agtcta |
324 |
Q |
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|||||| |
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| T |
33870209 |
agtcta |
33870214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 33858309 - 33858447
Alignment:
| Q |
19 |
tttctttactttttctcatttgttcacacaggttgctgtagatccaaagaaatttataggcctgcattctgttgctgatgctgttgagtatctccattca |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33858309 |
tttcttgactttttctcatttgttcacacaggttgccgtggatccaaagaaatttataggcctgcattctgttgctgatgctgttgagtatcttcattca |
33858408 |
T |
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| Q |
119 |
ggcaaaagcgtcgggaaggtaattttctttcttatgaaa |
157 |
Q |
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| T |
33858409 |
ggcaaaagcgccgggaaggtattttggtttcttaagaaa |
33858447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 33858725 - 33858869
Alignment:
| Q |
172 |
attttgatattgtaattgttgtgtaacaatctaattatatcatttctctaggtggttgtctgcgtggatccaaccttcgttaatcaagttgccaaattat |
271 |
Q |
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|||||||| |||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||| || | |||||||||| |
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| T |
33858725 |
attttgattttgtaactgctgtgtaacaatttaattatatcatttctgtaggtggttgtctgcgtggacccaaccttctctaaccatgcagccaaattat |
33858824 |
T |
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| Q |
272 |
gagttaacacatgacaaatacagaaagaagtcaagttttgagctc |
316 |
Q |
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| T |
33858825 |
aagtcaacacatgtcaaatacagaaggaagtcaagttttcagctc |
33858869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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