View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_3 (Length: 855)

Name: NF11880_low_3
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_3
NF11880_low_3
[»] chr3 (28 HSPs)
chr3 (42-848)||(19398089-19398912)
chr3 (347-848)||(19374349-19374862)
chr3 (440-652)||(18102211-18102417)
chr3 (103-279)||(19373925-19374106)
chr3 (103-271)||(19332349-19332521)
chr3 (729-848)||(19333047-19333165)
chr3 (347-513)||(19332772-19332960)
chr3 (766-848)||(18143390-18143472)
chr3 (754-843)||(18021952-18022041)
chr3 (17-65)||(19397925-19397973)
chr3 (753-848)||(18115038-18115133)
chr3 (753-848)||(19460608-19460700)
chr3 (754-832)||(18102538-18102615)
chr3 (440-480)||(19337317-19337357)
chr3 (754-843)||(18145934-18146020)
chr3 (17-60)||(19373288-19373331)
chr3 (279-329)||(19374185-19374235)
chr3 (774-848)||(19435995-19436069)
chr3 (593-652)||(17949303-17949363)
chr3 (754-801)||(18107542-18107589)
chr3 (99-130)||(19373993-19374024)
chr3 (593-652)||(19413062-19413121)
chr3 (715-758)||(19419015-19419058)
chr3 (754-801)||(19419084-19419131)
chr3 (717-756)||(24494369-24494408)
chr3 (100-130)||(19332417-19332447)
chr3 (464-505)||(19379718-19379759)
chr3 (593-634)||(19423468-19423509)
[»] chr6 (2 HSPs)
chr6 (754-843)||(13667686-13667775)
chr6 (754-805)||(13667837-13667888)


Alignment Details
Target: chr3 (Bit Score: 721; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 42 - 848
Target Start/End: Original strand, 19398089 - 19398912
Alignment:
Q  42 attgagttgaaattgtaaaactatgtgatgcacttttcaaaataagaaaaagagacaaaaacaaattgatagatattagatagcattgagatgaagagac 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398089 attgagttgaaattgtaaaactatgtgatgcacttttcaaaataagaaaaagagacaaaaacaaattgatagatattagatagcattgagatgaagagac 19398188  T
Q  142 tataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaaatgtagaaacaaattgatcatttacgtcaaagtaccatt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398189 tataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaaatgtagaaacaaattgatcatttacgtcaaagtaccatt 19398288  T
Q  242 tgtttgcaatacataactacaaatatcatgtcattaaattagaggttgcttatagtctagtacaatcatatcaatttaaaatttatatttatatcattgt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398289 tgtttgcaatacataactacaaatatcatgtcattaaattagaggttgcttatagtctagtacaatcatatcaatttaaaatttatatttatatcattgt 19398388  T
Q  342 attagccaaatttaaagtccgggtaacttgtgtccatttttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattt 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398389 attagccaaatttaaagtccgggtaacttgtgtccatttttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattt 19398488  T
Q  442 taattttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccacaaa 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398489 taattttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccacaaa 19398588  T
Q  542 atagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatat-- 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  19398589 atagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatatta 19398688  T
Q  640 ------------------tattcaaagtcttgaagttttggaactatttcannnnnnnnctaacaatcagaccccatttgtatcaattgacactgttgtc 721  Q
                      |||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||| |||||||||    
T  19398689 ttcaaagtcttccctgcctattcaaagtcttgaagttttgaaactatttca---tttttctaacaatcagaccccatttgtatcaattgaaactgttgtc 19398785  T
Q  722 cacatactttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttg 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19398786 cacatactttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttg 19398885  T
Q  822 attcaaacaattattcatgatgtccat 848  Q
    |||||||||||||||||||||| ||||    
T  19398886 attcaaacaattattcatgatgaccat 19398912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 347 - 848
Target Start/End: Original strand, 19374349 - 19374862
Alignment:
Q  347 ccaaatttaaagtccgggtaacttgtgtccatttttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattttaa-- 444  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||       
T  19374349 ccaagtttaaagtccggataacttgtgtccattttccttataaatcagagggttaactacaaaacaaatttaaatttgtattactttgttaattttacat 19374448  T
Q  445 ------------------ttttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacata 526  Q
                      ||||||||||| | || |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |||||    
T  19374449 gacaaaattggaatttagttttgccaaatatatgcggtattcatagcaatttcctttctcatatcaaaaaggttcaaatgatggcagggtgatccacata 19374548  T
Q  527 attgttgtccacaaaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttc 626  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  19374549 attgttatccgcaaaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagttttaaacatgaggttc 19374648  T
Q  627 aaagaaattatattattcaaagtcttgaagttttggaactatttcannnnnnnnctaacaatcagaccccatttgtatcaattgacactgttgtccacat 726  Q
    ||||||||||||||||   |||||||  |    ||   ||||||||        |||||||||||||||||||||||||||| || | ||||||||||||    
T  19374649 aaagaaattatattataacaagtcttcca----tg--cctatttca--ttttttctaacaatcagaccccatttgtatcaatcgaaattgttgtccacat 19374740  T
Q  727 actttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattca 826  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  19374741 actttcttatcaagccttttccaatttatctaatataagcacattaaaatctcataacaaatcataatcccatttgaattagacattcttctttgattca 19374840  T
Q  827 aacaattattcatgatgtccat 848  Q
    ||||||||||||| ||| ||||    
T  19374841 aacaattattcatcatgaccat 19374862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 440 - 652
Target Start/End: Original strand, 18102211 - 18102417
Alignment:
Q  440 tttaattttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccaca 539  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  18102211 tttaattttgccaaatctgtgcggtattcatagcaatttcctttgtcatatcaaaaaggttgaaatgatgacagggtgatccacataattgttgtccaca 18102310  T
Q  540 aaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatat 639  Q
    |||||||||||||||||||||| ||      |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  18102311 aaatagtatcaattaaacattttcc------aatcgtaatatgataagttttgaataatttggcaccaagtttaaaacatgaggttcaaagaaattatat 18102404  T
Q  640 tattcaaagtctt 652  Q
    ||||| |||||||    
T  18102405 tattccaagtctt 18102417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 19373925 - 19374106
Alignment:
Q  103 caaattgatagatattagatagcattgagatgaagagactataggcattacataaatagcaatgttag-aaacaaaatgatagatattagatagcattga 201  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19373925 caaattgatagatattagatagcattgagatgtagaaactataggcattacataaatagcaatgttagaaaacaaattgatagatattagatagcattga 19374024  T
Q  202 aatgtagaaacaaattgatcatttac----gtcaaagtaccatttgtttgcaatacataactacaaatatcatgtcattaaa 279  Q
    ||||||||||||||||||||||||||    ||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  19374025 aatgtagaaacaaattgatcatttacggcagtcaatgtaccatttgtttgcaatacagaactacaaatatcatgtctttaaa 19374106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 103 - 271
Target Start/End: Original strand, 19332349 - 19332521
Alignment:
Q  103 caaattgatagatattagatagcattgagatgaagagactataggcattacataaatagcaatgttagaaacaaaatgatagatattagatagcattgaa 202  Q
    |||||||||||||||| |||| || ||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19332349 caaattgatagatattcgatatcaatgagatgtagaaactattggcattacataaatagcaatgttagaaacaaattgatagatattagatagcattgaa 19332448  T
Q  203 atgtagaaacaaattgatcatttac----gtcaaagtaccatttgtttgcaatacataactacaaatatcatg 271  Q
    ||||||||| |||||||||||||||    ||||| |||||||||||| |||||||| |||| |||||||||||    
T  19332449 atgtagaaataaattgatcatttacggcagtcaatgtaccatttgttggcaatacaaaactgcaaatatcatg 19332521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 729 - 848
Target Start/End: Original strand, 19333047 - 19333165
Alignment:
Q  729 tttcttatcaagccttttccaatttatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaa 828  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  19333047 tttcttagcaacctttttccaattt-tcttatataagcacattaaaatctcataacaaatcataatcccatttgaattagatattcttctttgattcaaa 19333145  T
Q  829 caattattcatgatgtccat 848  Q
    ||||||||||||||| ||||    
T  19333146 caattattcatgatgaccat 19333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 347 - 513
Target Start/End: Original strand, 19332772 - 19332960
Alignment:
Q  347 ccaaatttaaagtccgggtaacttgtgtccatttttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaat------- 439  Q
    |||||||||||||| ||||| ||||||||||||||   |||||||  |||||||||||||| || ||| || |||||||||||||||||||||           
T  19332772 ccaaatttaaagtcagggtaccttgtgtccattttctctataaatctgagggttaacaacataataaaatttaatttgtattactttgttaattttaaat 19332871  T
Q  440 -------------tttaattttgccaaatctgtgtggtattcatagcaatttcctctgtca-tatcaaaa-aggttcaaatgatgacag 513  Q
                 ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  19332872 gacaaatttgaaatttaattttgccaaatctgtgcggtattcatagcaatttcctttgtcattatcaaaacaggttcaaatgatgacag 19332960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 766 - 848
Target Start/End: Original strand, 18143390 - 18143472
Alignment:
Q  766 cacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 848  Q
    |||||||||||||||||| || ||||||| | |||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  18143390 cacattaaaatctcataacaactcataattccatttgaattagatattcttctctgattcaaacaattattcatgatgaccat 18143472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 18021952 - 18022041
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 843  Q
    ||||||||||| |||| ||||||||||||| |||||||||| | | ||||||||||  ||||||| ||||||||||||||||||| ||||    
T  18021952 atcttatataaccacagtaaaatctcataacaaatcataataccaattgaattagatcttcttctctgattcaaacaattattcacgatg 18022041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 19397925 - 19397973
Alignment:
Q  17 acttcttgtattgaaacttctacaaattgagttgaaattgtaaaactat 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19397925 acttcttgtattgaaacttctacaaattgagttgaaattgtaaaactat 19397973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 753 - 848
Target Start/End: Original strand, 18115038 - 18115133
Alignment:
Q  753 tatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 848  Q
    ||||||||||||||||||||||||||||||  |||||||| |   |||||||||| |  ||||||| ||||||||||||| |||||||||| ||||    
T  18115038 tatcttatataagcacattaaaatctcataccaaatcatattttcatttgaattacatcttcttctctgattcaaacaatcattcatgatgaccat 18115133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 848
Target Start/End: Original strand, 19460608 - 19460700
Alignment:
Q  753 tatcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 848  Q
    ||||||||||||||||||||||||||||||  |||||||| |   ||||||||||   | |||||| ||||||||||||| |||||||||| ||||    
T  19460608 tatcttatataagcacattaaaatctcataccaaatcatattttcatttgaatta---aatcttctctgattcaaacaatcattcatgatgaccat 19460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 754 - 832
Target Start/End: Original strand, 18102538 - 18102615
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaat 832  Q
    ||||||||||||||||||||| |||||||  ||||||||||   ||||||||||||  ||||||| |||||||||||||    
T  18102538 atcttatataagcacattaaa-tctcataccaaatcataatttcatttgaattagatcttcttctctgattcaaacaat 18102615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 480
Target Start/End: Original strand, 19337317 - 19337357
Alignment:
Q  440 tttaattttgccaaatctgtgtggtattcatagcaatttcc 480  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19337317 tttaattttgccaaatctgtgcggtattcatagcaatttcc 19337357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 754 - 843
Target Start/End: Original strand, 18145934 - 18146020
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 843  Q
    ||||||||| | ||| ||||||||| |||| |||||||||| | ||||||||||||   ||||||  |||||||||||| ||||||||||    
T  18145934 atcttatatgaccactttaaaatcttataacaaatcataataccatttgaattaga---tcttctcagattcaaacaatcattcatgatg 18146020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 19373288 - 19373331
Alignment:
Q  17 acttcttgtattgaaacttctacaaattgagttgaaattgtaaa 60  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  19373288 acttcttgtattgaaacttctactaattgcgttgaaattgtaaa 19373331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 19374185 - 19374235
Alignment:
Q  279 attagaggttgcttatagtctagtacaatcatatcaatttaaaatttatat 329  Q
    ||||||||||||||||||||||| ||||||||||  | |||||||||||||    
T  19374185 attagaggttgcttatagtctagaacaatcatattcacttaaaatttatat 19374235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 774 - 848
Target Start/End: Original strand, 19435995 - 19436069
Alignment:
Q  774 aatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatgtccat 848  Q
    |||||| ||| || ||| ||||| ||||||||||||  ||||||| ||||||||||||||||||| |||| ||||    
T  19435995 aatctcttaacaagtcacaatcccatttgaattagatcttcttctctgattcaaacaattattcaagatgaccat 19436069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 652
Target Start/End: Original strand, 17949303 - 17949363
Alignment:
Q  593 aataatttggtaccaagtttaaaacttgagg-ttcaaagaaattatattattcaaagtctt 652  Q
    |||||||||| |||||||||||||| ||||| |||||||||||| ||| |||| |||||||    
T  17949303 aataatttggcaccaagtttaaaacatgaggtttcaaagaaattttataattctaagtctt 17949363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 801
Target Start/End: Original strand, 18107542 - 18107589
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaattt 801  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  18107542 atcttatataaccacattgaaatctcataacaaatcataatcccattt 18107589  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 130
Target Start/End: Original strand, 19373993 - 19374024
Alignment:
Q  99 aaaacaaattgatagatattagatagcattga 130  Q
    ||||||||||||||||||||||||||||||||    
T  19373993 aaaacaaattgatagatattagatagcattga 19374024  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 652
Target Start/End: Original strand, 19413062 - 19413121
Alignment:
Q  593 aataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattcaaagtctt 652  Q
    |||||||||| ||||| |||||||| |||| |||||||||||| ||| |||| |||||||    
T  19413062 aataatttggaaccaattttaaaacatgagcttcaaagaaattctataattccaagtctt 19413121  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 758
Target Start/End: Original strand, 19419015 - 19419058
Alignment:
Q  715 tgttgtccacatactttcttatcaagccttttccaatttatctt 758  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||    
T  19419015 tgttgtccacatactttcttatcaaactttttccaatttgtctt 19419058  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 801
Target Start/End: Original strand, 19419084 - 19419131
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaattt 801  Q
    ||||||||||| |||||| ||||||||||| |||||||||||| ||||    
T  19419084 atcttatataaccacattgaaatctcataacaaatcataatcccattt 19419131  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 756
Target Start/End: Complemental strand, 24494408 - 24494369
Alignment:
Q  717 ttgtccacatactttcttatcaagccttttccaatttatc 756  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  24494408 ttgtccacatactttcttatcaagcttttttcaatttatc 24494369  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 19332417 - 19332447
Alignment:
Q  100 aaacaaattgatagatattagatagcattga 130  Q
    |||||||||||||||||||||||||||||||    
T  19332417 aaacaaattgatagatattagatagcattga 19332447  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Original strand, 19379718 - 19379759
Alignment:
Q  464 tattcatagcaatttcctctgtcatatcaaaaaggttcaaat 505  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  19379718 tattcatagcaattacctttgtcatatcaaagaggttcaaat 19379759  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 634
Target Start/End: Original strand, 19423468 - 19423509
Alignment:
Q  593 aataatttggtaccaagtttaaaacttgaggttcaaagaaat 634  Q
    |||||||||| ||||| |||||||| ||||||||||||||||    
T  19423468 aataatttggaaccaattttaaaacatgaggttcaaagaaat 19423509  T

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Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 754 - 843
Target Start/End: Complemental strand, 13667775 - 13667686
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaatttgaattagacattcttctttgattcaaacaattattcatgatg 843  Q
    |||||||||||||||||| ||||||||| | ||||||||| |  ||||||||||||  ||||||| ||  ||||||||||||||||||||    
T  13667775 atcttatataagcacattgaaatctcatcacaaatcataaccatatttgaattagatcttcttctctgggtcaaacaattattcatgatg 13667686  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 754 - 805
Target Start/End: Complemental strand, 13667888 - 13667837
Alignment:
Q  754 atcttatataagcacattaaaatctcataataaatcataatccaatttgaat 805  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  13667888 atcttatataagcacattaaaatctcttaacaaatcataatcccatttgaat 13667837  T

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