View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11880_low_30 (Length: 298)
Name: NF11880_low_30
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 39494576 - 39494858
Alignment:
| Q |
20 |
catttggcttacaaaacccttgagattctgcattcgagctttaaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttctttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39494576 |
catttggcttacaaaacccttgagattctgcattcgagctttgaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttctttt |
39494675 |
T |
|
| Q |
120 |
gtctggaactccttcaattgtccttcgaattgctccttttctgattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttca |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39494676 |
gtctggaactccttcaattgtcctttgaattgctccttttctgattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttca |
39494775 |
T |
|
| Q |
220 |
cttggtc----------------tttgaatcaaactctttcaccagacctttgagttgcttctctttcaacactagctgtctc |
286 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39494776 |
cttggtctttgaattgctcctcttttgaatcaaactctttcactagacctttgagttgctcctctttcaacactagctgtctc |
39494858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 39130480 - 39130309
Alignment:
| Q |
62 |
aaattcctcctctttggattcaaattcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtccttcgaattgctccttttct |
161 |
Q |
| |
|
|||||||| |||| | |||| || ||||| ||| |||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
39130480 |
aaattccttctctattgattgaatctccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatttcttcttttct |
39130381 |
T |
|
| Q |
162 |
gattccagctccttcacctggacatcaagttggttttgttttgacttaaggtccttcacttggtctttgaat |
233 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||| |||||||| |||| ||||||| || |||||||| |
|
|
| T |
39130380 |
gattcgagctccttcacacggacaccaagttggttttcttttgactgaaggcccttcaccaggcctttgaat |
39130309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 233
Target Start/End: Original strand, 39426829 - 39426952
Alignment:
| Q |
110 |
cttttcttttgtctggaactccttcaattgtccttcgaattgctccttttctgattccagctccttcacctggacatcaagttggttttgttttgactta |
209 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| ||||||| | |||||||||| | |||||||||| |||||||||||| ||||| |||||||| | |
|
|
| T |
39426829 |
cttttcttttgactggagctccttcaattgtccttcaaattgcttcgtttctgattcgatctccttcacccggacatcaagttcgttttcttttgactga |
39426928 |
T |
|
| Q |
210 |
aggtccttcacttggtctttgaat |
233 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
39426929 |
aggtccttcacttggcctttgaat |
39426952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 39130564 - 39130479
Alignment:
| Q |
20 |
catttggcttacaaaacccttgagattctgcattcgagctttaaattcctcctctttggattcaaattcctttactcggtcttcaa |
105 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39130564 |
catttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaa |
39130479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 39143614 - 39143536
Alignment:
| Q |
20 |
catttggcttacaaaacccttgagattctgcattcgagctttaaattcctcctctttggattcaaattcctttactcgg |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| || ||| | |||||||| ||||||||||||||| ||||| |
|
|
| T |
39143614 |
catttggcttacaaaacccttgagcttctgctttcgagcattgaatccatcctcttttgattcaaattcctttcctcgg |
39143536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 39143532 - 39143435
Alignment:
| Q |
81 |
tcaaattcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtccttcgaattgctccttttctgattccagctccttcac |
178 |
Q |
| |
|
||||| ||||| ||| || |||||| |||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
39143532 |
tcaaactccttcacttggacttcaaccagcttttcttttgatcggatatccttcaattgctcttcgaattgcttcttttctaattcaagctccttcac |
39143435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 39426697 - 39426781
Alignment:
| Q |
20 |
catttggcttacaaaacccttgagattctgcattcgagctttaaattcctcctctttggattcaaattcctttactcggtcttca |
104 |
Q |
| |
|
|||||||||| |||||| |||||| | ||||||||||||||| | || ||||||| |||| | || ||||||| ||||||||||| |
|
|
| T |
39426697 |
catttggcttgcaaaacgcttgagttcctgcattcgagctttgagtttctcctctctggacttaagttcctttcctcggtcttca |
39426781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 39415120 - 39415170
Alignment:
| Q |
128 |
ctccttcaattgtccttcgaattgctccttttctgattccagctccttcac |
178 |
Q |
| |
|
|||||||| ||| | |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
39415120 |
ctccttcagttggctttcgaaatgcttcttttctgattccagctccttcac |
39415170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University