View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_32 (Length: 291)
Name: NF11880_low_32
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 12445804 - 12445509
Alignment:
| Q |
1 |
tcatttgaggcttatattaatgtttataatccaagggttggttggtaaaattggttagtacttacactaaaatatagttgattcccatatagacaaacgc |
100 |
Q |
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| T |
12445804 |
tcatttgaggcttatattaatgtttataatccaagggttggttggtaaaattagttagtacttacactaaaatatagttgattcccatatagacaaacgc |
12445705 |
T |
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| Q |
101 |
atcatcaagatttttataatacagcaacaggtagaagagtagaaaagctagcatcaatgcaatttggtgcatgtaaagtgacc----------------- |
183 |
Q |
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| T |
12445704 |
atcatcaagatttttataatacagcaacaggtagaagagtagaaaagctagcaccaatgcaatttggtgcatgtaaagtgaccacactttttttgccctt |
12445605 |
T |
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| Q |
184 |
-----acatatatt-tacttgtcgcggtgctcgtgttatgtccaagttgtttataaaaaataagaggaaatagtcactttgatccttgactctgca |
273 |
Q |
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| T |
12445604 |
ttccaacatatattttacttgtcgcagtactcgtgttatgtccaagttgtttataaaaaataagaggaaatagtcactttgatccttgactctgca |
12445509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 28591248 - 28591207
Alignment:
| Q |
232 |
aaaaaataagaggaaatagtcactttgatccttgactctgca |
273 |
Q |
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| T |
28591248 |
aaaaaaaaagagcaaatagtcactttgatccctgactctgca |
28591207 |
T |
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