View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_35 (Length: 267)
Name: NF11880_low_35
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 51739037 - 51739248
Alignment:
| Q |
34 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattgaagttttgacaaacacattaaatgcacacaatggatgccacaca |
133 |
Q |
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| T |
51739037 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattga-gttttgacaaaaacattaaatccacacaatggatgccaccca |
51739135 |
T |
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| Q |
134 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739136 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
51739235 |
T |
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| Q |
234 |
aggaccctaggtc |
246 |
Q |
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||||||||||||| |
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| T |
51739236 |
aggaccctaggtc |
51739248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 10199570 - 10199670
Alignment:
| Q |
138 |
atgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttagga |
237 |
Q |
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||||||||||| | || || |||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
10199570 |
atgttttgtaacgatgatcttgttaaccctctaagttctatgggtatgcaagtgtcatgcattcttgttgtgtcacacttcttcaacgttgttcttagga |
10199669 |
T |
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| Q |
238 |
c |
238 |
Q |
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| |
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| T |
10199670 |
c |
10199670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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