View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_37 (Length: 246)

Name: NF11880_low_37
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_37
NF11880_low_37
[»] scaffold0157 (1 HSPs)
scaffold0157 (5-246)||(34994-35235)
[»] chr4 (5 HSPs)
chr4 (5-246)||(12485242-12485483)
chr4 (33-246)||(12469118-12469331)
chr4 (33-238)||(12466483-12466687)
chr4 (72-131)||(47518421-47518480)
chr4 (81-151)||(23054177-23054254)
[»] chr5 (2 HSPs)
chr5 (79-131)||(27170059-27170111)
chr5 (75-131)||(18697029-18697085)
[»] chr2 (2 HSPs)
chr2 (75-128)||(1551571-1551624)
chr2 (75-151)||(17281887-17281970)
[»] chr8 (1 HSPs)
chr8 (75-131)||(10408921-10408977)
[»] chr1 (2 HSPs)
chr1 (75-131)||(34118068-34118124)
chr1 (75-161)||(11407917-11408011)
[»] chr6 (1 HSPs)
chr6 (75-131)||(21881563-21881619)


Alignment Details
Target: scaffold0157 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 34994 - 35235
Alignment:
Q  5 ccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcacc 104  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34994 ccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcacc 35093  T
Q  105 actcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  35094 actcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccattagtgttga 35193  T
Q  205 aaggctagagaaacaaagccgcaacacatattacgaccccac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35194 aaggctagagaaacaaagccgcaacacatattacgaccccac 35235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 12485483 - 12485242
Alignment:
Q  5 ccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcacc 104  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12485483 ccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcacc 12485384  T
Q  105 actcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  12485383 actcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccattagtgttga 12485284  T
Q  205 aaggctagagaaacaaagccgcaacacatattacgaccccac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12485283 aaggctagagaaacaaagccgcaacacatattacgaccccac 12485242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 12469331 - 12469118
Alignment:
Q  33 catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca 132  Q
    ||||| ||||||  ||||||||||||  |||| |||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||| |||||||    
T  12469331 catatacgaacattgatttggtatcaccaatcgtgacatattcatcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctca 12469232  T
Q  133 ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca 232  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||||||  |||||| |||||| ||||||||||   |   |||||||||||||||||| |    
T  12469231 ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaataacccaagaaacaaagccgcaacata 12469132  T
Q  233 tattacgaccccac 246  Q
    ||||| || |||||    
T  12469131 tattatgatcccac 12469118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 12466687 - 12466483
Alignment:
Q  33 catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca 132  Q
    ||||| ||||||  ||||||||||||  |||| |||||||| ||||||||||||||||||  ||||||||| || ||| ||||||||||||| |||||||    
T  12466687 catatacgaacattgatttggtatcaccaatcgtgacatat-catcaccaccatcgtgaccagtccatcacaacccacattgcgagaaaacaaaacctca 12466589  T
Q  133 ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca 232  Q
    ||||||||||||||| ||||  |||||||| |||| |||||||||||  |||||| |||||| ||||||||||   | ||||||||||||| ||||||||    
T  12466588 ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaacaaccagagaaacaaagctgcaacaca 12466489  T
Q  233 tattac 238  Q
    ||||||    
T  12466488 tattac 12466483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 47518480 - 47518421
Alignment:
Q  72 attcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    ||||||||||||||| ||||||| |||||||||||  | |||||||| ||||||||||||    
T  47518480 attcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctc 47518421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 23054254 - 23054177
Alignment:
Q  81 caccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 151  Q
    |||||||||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  23054254 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatc 23054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 27170111 - 27170059
Alignment:
Q  79 accaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    |||||||||||||| | |||||||||||| |||||||||| ||||||||||||    
T  27170111 accaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc 27170059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 18697029 - 18697085
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    |||||||||||||||||||| |||||||||||  | |||||| | ||||||||||||    
T  18697029 catcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctc 18697085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 1551624 - 1551571
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 128  Q
    |||||||||||||||||||| |||||||||||  | |||||||| |||||||||    
T  1551624 catcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataac 1551571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 17281970 - 17281887
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc 151  Q
    |||||||||||| ||||||| |||||||||||  | |||||||| ||||||||||||       ||||||||||||||||||||    
T  17281970 catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatc 17281887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 10408921 - 10408977
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    |||||||||||||||||| | |||||||||||  | |||||||| ||||||||||||    
T  10408921 catcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctc 10408977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 34118068 - 34118124
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    |||||||||||||||||| | |||||||||||  | |||||||| ||||||||||||    
T  34118068 catcaccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctc 34118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 11408011 - 11407917
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacct--------caccaagagagaaaacaaatctcatatcaac 161  Q
    |||||||||| ||||| | | |||||||||||| | |||||||| |||||||||||        |||||||||||||||||||| | ||||||||    
T  11408011 catcaccaccttcgtggccgatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaatatgatatcaac 11407917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 21881563 - 21881619
Alignment:
Q  75 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc 131  Q
    |||||||||||||||||| | |||||||||||    |||||||| ||||||||||||    
T  21881563 catcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctc 21881619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University