View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_4 (Length: 777)
Name: NF11880_low_4
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 199 - 571
Target Start/End: Original strand, 19024082 - 19024446
Alignment:
| Q |
199 |
agtgttatttttccaagaggaaaaaatatgtcagtttctttgatgatagttaacaaaaaatcctatagttattatttttaccatggaacagaacacaaac |
298 |
Q |
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| T |
19024082 |
agtgttatttttccaagaggaaaaaatatgttagtttctttgatgatagttaacaagaagtcctatagttattattgttaccatggaacagaacacaaac |
19024181 |
T |
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| Q |
299 |
agagaatctaaagtgaaattcttaggagagatgattttgttaccacttcaagctctctcccaccaccgtgagtcagtcgccaacgttccaaagcccttta |
398 |
Q |
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| T |
19024182 |
agagaatctaaagtgaaattcttaggggaggtgattgtgttaccacttcaagttctctcccaccaccgtgagtcagatatcaacgttccgaagcccttta |
19024281 |
T |
|
| Q |
399 |
cctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaatcaacttccttgcaactaataattnnnnnnntaaggaatcggaat |
498 |
Q |
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| T |
19024282 |
cctcaaccgttg-ttgaacttcaatattacacatgctttagttgttgttgtagaatcaactcccttgcaacaaaaaa-------aataaggaatacaaat |
19024373 |
T |
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| Q |
499 |
gaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttcttgcctattcaccaataac |
571 |
Q |
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| T |
19024374 |
gaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatttattctttcctattcaccaataac |
19024446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 759
Target Start/End: Original strand, 30397397 - 30397438
Alignment:
| Q |
718 |
tgcaatataggttcgtctagaaaacattcctaagaaatacca |
759 |
Q |
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| T |
30397397 |
tgcaatataggttagtctagaaaacagtcttaagaaatacca |
30397438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 354 - 649
Target Start/End: Original strand, 24414033 - 24414321
Alignment:
| Q |
354 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttgaacttcaatattacacgtgctttagttgctgttgtagaa |
453 |
Q |
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| T |
24414033 |
tctcccaccaccgtgagtcagtcgccaacgttccaaagccctttacctcaaccgttgcttcaacttcaatattagacgtgctttaattgctgttgtagaa |
24414132 |
T |
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| Q |
454 |
tcaacttccttgcaactaataattnnnnnnntaaggaatcggaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaatcagttct |
553 |
Q |
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| T |
24414133 |
tcaactcccttgcaacaaaaaa-------aataaggaatacaaatgaagaaaaacaatcaaataagcaaatgaagacatataggtctggaaattggttct |
24414225 |
T |
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| Q |
554 |
tgcctattcaccaataacttcaataggatttaagaaatacgctccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
649 |
Q |
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| T |
24414226 |
tgcctattcaccaataacttcaataggatttaagaaatatgttccttcacaataggataaaagacgggactgatttatctcaaatcaactaataat |
24414321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 684
Target Start/End: Complemental strand, 48011422 - 48011384
Alignment:
| Q |
646 |
taatgtactttgattcccatgtcatattctctgcctcat |
684 |
Q |
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| T |
48011422 |
taatgtactttgattcccatgtcacatgctctgcctcat |
48011384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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