View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_5 (Length: 719)
Name: NF11880_low_5
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 366
Target Start/End: Original strand, 2655903 - 2656211
Alignment:
| Q |
32 |
catcaaacagatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacgcgcatgcaccatcttcgacggctgtgtgagagat |
131 |
Q |
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| T |
2655903 |
catcaaacatatgatcctcgtcaacgattattacgtcagctttaatctttgggttcaattttcacg----agcaccatctttgacggctgtgtgacagat |
2655998 |
T |
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| Q |
132 |
gcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagacttaccaacaggagtatggaccatgtttgtgt |
231 |
Q |
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| T |
2655999 |
gcttgtccaacctcgccacttccatttgtaacagaatccatatcaccggatgatcttttcatagaagacttaccaacaggagtatgg------------- |
2656085 |
T |
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| Q |
232 |
cgctgcacgaatcaccacattctccaacctgctgctgcaaaatatggttttacaataatcaagataaagtaacaaaattctaacactataatccaagtta |
331 |
Q |
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| T |
2656086 |
---------aatcaccacattctacaacctgctgctgcaaaatatgattttacaataatcaagataaaataacaaaattctaacattataatccaagtta |
2656176 |
T |
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| Q |
332 |
taagtgtattaaagatcgtaaggttataccatgtt |
366 |
Q |
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| T |
2656177 |
taagtgtattaaagattataaggttataccatgtt |
2656211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 522 - 703
Target Start/End: Original strand, 2656362 - 2656543
Alignment:
| Q |
522 |
cactaggtacatgaacgaaagtaccatttcaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
621 |
Q |
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| T |
2656362 |
cactgggtacatgaacgaaagtaccattccaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca |
2656461 |
T |
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| Q |
622 |
attagtaatgattatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaac |
703 |
Q |
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| T |
2656462 |
attagtaatgatcatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaac |
2656543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 47764474 - 47764633
Alignment:
| Q |
103 |
gcaccatcttcgacggctgtgtgagagatgcttgtccaacctcgccacttccatttgtaacagaatccatatcaccagatgatcttttcataaaagactt |
202 |
Q |
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| T |
47764474 |
gcaccatcttcgagggctgtgtcacagatgcttgtccaacctcgccatttccattcgttgaagaatctatattaccggatgatcttttcatagaagattt |
47764573 |
T |
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| Q |
203 |
accaacaggagtatggaccatgtttgtgtcgctgcacgaatcaccacattctccaacctg |
262 |
Q |
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| T |
47764574 |
gccaacaggagtgtggacaatgtttgtgtcgctacacgaatcgccacattctacaacctg |
47764633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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