View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11880_low_8 (Length: 678)
Name: NF11880_low_8
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11880_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Original strand, 39738249 - 39738900
Alignment:
| Q |
18 |
atgtatttggttagccttttttaccacaacatttttacttcaataccaatttagcttatcagaaaacacattttctactgcaaattttccttcctaattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39738249 |
atgtatttggttagccttttttaccacaacatttttacttcaataccaatttagcttatcagaaaacacattttctactgtgaattttccttcctaattt |
39738348 |
T |
|
| Q |
118 |
gaagactatttcttagactgtaaggcttcaattatgtaggctaatcttagaatatggttcatgaattttgaaatccattatgcttaattgcatgactaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39738349 |
gaagactatttcttagactgtaaggcttcaattatgtaggctaatcttagaatatggttcatgaattttgaaatccattatgcataattgcatgactaat |
39738448 |
T |
|
| Q |
218 |
tattaatgttagtatcatgcagtctttctgcattgtaggacaactctgaattgttttacacttccaagttttcagctaatttctcttttcatttacaatt |
317 |
Q |
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| T |
39738449 |
tattaatgttagtatcatgcagtctttctgcattgtaggacaactctgaattgttttacacttccaagttttcagctaatttctcttttcatttacaatt |
39738548 |
T |
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| Q |
318 |
acgattcaaatagagaattgacagattttatcagttgaatcaacacatttctcgaatcaacgcatgatgttcatttttctatttcagtagacatatatac |
417 |
Q |
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| T |
39738549 |
acgattcaaatagagaattgacagattttctcagttgaatcaacacatttctcgaatcaacgcatgatggtcatttttctatttcagtagacatatatac |
39738648 |
T |
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| Q |
418 |
aatataatattttggttttggttgacccgatatatatagctggctctatcttgtgcttgaagtgannnnnnnnnnnnnnnnctgtagttgttatgttagg |
517 |
Q |
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| T |
39738649 |
aatataatattttggtttcggttgacccgatatatatagctggctctatcttgtgcttgaagtgattttttattttattttctgtagttgttatgttagg |
39738748 |
T |
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| Q |
518 |
tcctatcctatgtgtatgtatctgcagtgatcccttttgatgttannnnnnnnctcccactctgatcagtcgtgcactgattttcctaaatgggaacaat |
617 |
Q |
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| T |
39738749 |
tcctatcctatgtgtatttatctgcagtgatcccttttgatgttattttt----tttcactctgatcagtcgtgcactgattttcctaaatgggaacaat |
39738844 |
T |
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| Q |
618 |
gtgtgtggactatttctccaagtatttggatgttgcagattcagatagtttgccct |
673 |
Q |
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| T |
39738845 |
gtgtgtggactatttctccaagtatttggatgttgcagattcagatagtttaccct |
39738900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 39732780 - 39732843
Alignment:
| Q |
380 |
catgatgttcatttttctatttcagtagacat-atatacaatataatattttggttttggttga |
442 |
Q |
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| T |
39732780 |
catgatgtttatctttctatttcagttgacgtgatatacaatataatattttggttttgtttga |
39732843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 673
Target Start/End: Complemental strand, 37476683 - 37476632
Alignment:
| Q |
622 |
gtggactatttctccaagtatttggatgttgcagattcagatagtttgccct |
673 |
Q |
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||||||||||| |||| |||||||||||||||||||||| |||| |||||| |
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| T |
37476683 |
gtggactatttgtccatgtatttggatgttgcagattcaactagtctgccct |
37476632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 673
Target Start/End: Original strand, 36050201 - 36050253
Alignment:
| Q |
621 |
tgtggactatttctccaagtatttggatgttgcagattcagatagtttgccct |
673 |
Q |
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|||||||||||| |||| |||||||||||| || |||||| ||||||||||| |
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| T |
36050201 |
tgtggactatttgtccatgtatttggatgtcgcggattcaactagtttgccct |
36050253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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