View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11880_low_9 (Length: 654)

Name: NF11880_low_9
Description: NF11880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11880_low_9
NF11880_low_9
[»] chr2 (1 HSPs)
chr2 (19-648)||(41276381-41277010)


Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Complemental strand, 41277010 - 41276381
Alignment:
Q  19 gaatggaattggctttaagttgctacaaatcattcccaatcaacattcttgaccaagaccttaaacatggtctaaacacacttgaggagcatgtcagcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41277010 gaatggaattggctttaagttgctacaaatcattcccaatcaacattcttgaccaagaccttaaacatggtctaaacacacttgaggagcatgtcagcct 41276911  T
Q  119 aaccattaaaaatgctaaacacactttcctcggtagtggttcacttactgttcctgaatccaatgcaaaaaacataacacattttcttcaatcccttcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41276910 aaccattaaaaatgctaaacacactttcctcggtagtggttcacttactgttcctgaatccaatgcaaaaaacataacacattttcttcaatcccttcat 41276811  T
Q  219 accattccaacaactcaccaagaattacccannnnnnncttcctattttgtgccaaactccttcacatgaaaccatcaaccgaaggcccaacaaatgtcc 318  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41276810 accattccaacaactcaccaagaattacccatttttttcttcctattttgtgccaaactccttcacatgaaaccatcaaccgaaggcccaacaaatgtcc 41276711  T
Q  319 aagcccagcccattcacaaaaaagaaatttctcacgaagataaagataaatgggccaactgggccacaaaattgaaaagctcaaatcttctcccggcaat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41276710 aagcccagcccattcacaaaaaagaaatttctcacgaagataaagataaatgggccaattgggccacaaaattgaaaagctcaaatcttctcccggcaat 41276611  T
Q  419 aaagtactctttcgcattgggtctatcagtattcatgggcttattgtatagcaaagaaagcggtttctggtctgggcttccggtggccgtaagctacgtt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41276610 aaagtactctttcgcattgggtctatcagtattcatgggcttattgtatagcaaagaaagtggtttctggtctgggcttccggtggccgtaagctacgtt 41276511  T
Q  519 tcaggtagagaagcgactttccgggccgcaaatgttaaagcccaaggaacggtgatcggaactgtgtacggtgtgttgggttgtttcgtgtttaatagat 618  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41276510 tcaggtagagaagcgacttttcgggccgcaaatgttaaagcccaaggaacggtgatcggaactgtgtacggtgtgttgggttgtttcgtgtttaatagat 41276411  T
Q  619 tattgtcaattagattcttgtctctgcttc 648  Q
    ||||||||||||||||||||||| ||||||    
T  41276410 tattgtcaattagattcttgtctttgcttc 41276381  T

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