View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_high_1 (Length: 671)
Name: NF11881_high_1
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 55907589 - 55907854
Alignment:
| Q |
19 |
gtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagc |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907589 |
gtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagc |
55907688 |
T |
|
| Q |
119 |
tttctcccaaaattaatattacaactttgacttctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccc |
218 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907689 |
tttctcccaaaat----attacaactttgaattctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccc |
55907784 |
T |
|
| Q |
219 |
tttccttgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgg |
288 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907785 |
tttccttgaagaacttgacttcagtagtagtaatcctttcgctagtagagattttgatatgaatgtttgg |
55907854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 548043 - 547943
Alignment:
| Q |
137 |
ttacaactttgacttctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttga |
236 |
Q |
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|||||||||||| ||||||| |||||||||||||| |||||| ||||||| ||||| ||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
548043 |
ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga |
547944 |
T |
|
| Q |
237 |
c |
237 |
Q |
| |
|
| |
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|
| T |
547943 |
c |
547943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 661956 - 661854
Alignment:
| Q |
63 |
atcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaattaatattacaactttgacttctctcatttgt |
162 |
Q |
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||||| || |||||||||||||||||| | | ||| ||||||| ||| || ||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
661956 |
atcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaa----tatattacaactttaacctctctcatttgt |
661861 |
T |
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| Q |
163 |
tccaaca |
169 |
Q |
| |
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| ||||| |
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| T |
661860 |
tacaaca |
661854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 40641681 - 40641731
Alignment:
| Q |
464 |
ttctcaccgtcaatgattaatagtcatttacttttatctaatatatatgta |
514 |
Q |
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|||||||| |||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
40641681 |
ttctcaccatcaatgatcaatggtcgtttacttttatctaatatatatgta |
40641731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 3437647 - 3437748
Alignment:
| Q |
136 |
attacaactttgacttctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttg |
235 |
Q |
| |
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|||||||||||||| ||||||| |||||||||| ||| || ||| | | || | || ||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
3437647 |
attacaactttgacctctctcagttgttccaactttgattttctccatgaccgctatctaattcttatctctgattgcttccctttacttgaagtacttg |
3437746 |
T |
|
| Q |
236 |
ac |
237 |
Q |
| |
|
|| |
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| T |
3437747 |
ac |
3437748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 1036525 - 1036790
Alignment:
| Q |
19 |
gtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagc |
118 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036525 |
gtgacctcaacgcgcttctctaccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagc |
1036624 |
T |
|
| Q |
119 |
tttctcccaaaattaatattacaactttgacttctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgattgcttccc |
218 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| || |
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| T |
1036625 |
tttctcccaaaat----attacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcc |
1036720 |
T |
|
| Q |
219 |
tttccttgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036721 |
tttccttgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgtttgg |
1036790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 490 - 659
Target Start/End: Original strand, 1046272 - 1046443
Alignment:
| Q |
490 |
tttacttttatctaatat--atatgtaatcagggacacatataaggtgtaccatggtccacccatatttatatattattaattttttgcagtgttcaaat |
587 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046272 |
tttacttttatctaatatatatatgtaatgagggacacatataaggtgtaccatggtccacccatatttatatattattaattttttgcagtgttcaaat |
1046371 |
T |
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| Q |
588 |
aactttaagatggttctactttaatcacagaacaatttataagttagagaaacaagtactatattgtctgtg |
659 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046372 |
aactttaagatggttctactttaatcacagaacaatttataagttagagaaacaagtactatattgtctgtg |
1046443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 1044903 - 1045029
Alignment:
| Q |
284 |
tttggctttgctgacttaggttactaggaagtaagcttcaccaagaataaagaggaataatagattttgttgacatagtttgttttcctacttcgcatcc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044903 |
tttggctttgctgacttaggttactaggaagtaagcttcaccaggaataaacaggaataatagattttgttgacatagtttgttttcctacttcgcatcc |
1045002 |
T |
|
| Q |
384 |
ttttactgtttcagttctctataaaca |
410 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
1045003 |
ttttactgtttcagttctctataaaca |
1045029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 1036331 - 1036424
Alignment:
| Q |
19 |
gtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggctt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036331 |
gtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggctt |
1036424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 407 - 495
Target Start/End: Original strand, 1045056 - 1045144
Alignment:
| Q |
407 |
aacaacacttggtaannnnnnnatattagctaatggctaatgctgatttctacatatttctcaccgtcaatgattaatagtcatttact |
495 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1045056 |
aacaacacttggtaatttttttatattagctaatggctaatgctgatttctacattgttctcaccgtcaatgattaatagtcatttact |
1045144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 511
Target Start/End: Complemental strand, 1024314 - 1024240
Alignment:
| Q |
437 |
taatggctaatgctgatttctacatatttctcaccgtcaatgattaatagtcatttacttttatctaatatatat |
511 |
Q |
| |
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|||||||||||||| || ||| || |||||||| |||||||| ||| ||||||||||||| ||| |||||||| |
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|
| T |
1024314 |
taatggctaatgctaatatctgcagtgttctcaccctcaatgatcaatggtcatttacttttgtctgatatatat |
1024240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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