View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_high_3 (Length: 357)
Name: NF11881_high_3
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 341
Target Start/End: Complemental strand, 11225171 - 11224834
Alignment:
| Q |
3 |
agttcgcagaattttatcaacaatgtgtaactcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttttca |
101 |
Q |
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| T |
11225171 |
agttcgcagaattt-atcaacaatgtgtaactcttatactacatgaacaacatataatcaaccaacacgccttaaagtatacttacatccatctttttca |
11225073 |
T |
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| Q |
102 |
atcaatttgaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcacag |
201 |
Q |
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| T |
11225072 |
attaatttgcagaatctttttcaattaaacaatcagcttacaatcaggtaaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcag |
11224974 |
T |
|
| Q |
202 |
aatatttcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctatagcttttccttcttcgt |
301 |
Q |
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| T |
11224973 |
aatatttcaacaatgtgtaactcttatactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgt |
11224874 |
T |
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| Q |
302 |
tcacataatttccatcattctttattaaagttgacaaaat |
341 |
Q |
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| T |
11224873 |
tcacataatttccatcattctttattaaagttgacaaaat |
11224834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 11225527 - 11225243
Alignment:
| Q |
1 |
tcagttcgcagaattttatcaacaatgtgtaactcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatcttttt |
99 |
Q |
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| T |
11225527 |
tcagttctcagaattttgtcaagaatgcgtaacacttgtactacatgcacaacatttaatcaaccaacacacccaaaagtatacttacagctatattttt |
11225428 |
T |
|
| Q |
100 |
caatcaatttgaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcac |
199 |
Q |
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| T |
11225427 |
caatcaacttgcagaatccttttgaattaaataatcagcttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttcc |
11225328 |
T |
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| Q |
200 |
agaatatt-tcaacaatgtgtaactcgtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctat |
284 |
Q |
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| T |
11225327 |
agaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaa-tcaacacacccaaaagtatatttacagctat |
11225243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 285
Target Start/End: Complemental strand, 11225592 - 11225433
Alignment:
| Q |
126 |
ttaaacaatcaacttacaatcagataaacattaaacaatcaatttgcagaattttgattttgtaatcagttcacagaatatt-tcaacaatgtgtaactc |
224 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||||||| || ||| |||||||||||| ||||||||| |||||| || |||| |||| ||||| | |
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| T |
11225592 |
ttaaacaatcaacttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacac |
11225493 |
T |
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| Q |
225 |
gtatactacatgcacaacatttaatcaacttaacacacccaaaaatatacttaaagctata |
285 |
Q |
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| T |
11225492 |
ttgtactacatgcacaacatttaatcaac-caacacacccaaaagtatacttacagctata |
11225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 11225328 - 11225174
Alignment:
| Q |
9 |
cagaattttatcaacaatgtgtaactcttatactacatgaacaccatataatcaccca-cacgccttaaagtatacttacatccatctttttcaatcaat |
107 |
Q |
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||||||||||||||||||||| ||| |||||| |||||| | | ||| |||||| || ||| || |||||||| ||||| | ||||||||| |||| | |
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| T |
11225328 |
cagaattttatcaacaatgtgcaacacttatagtacatgcataacatttaatcaatcaacacacccaaaagtatatttacagctatctttttccatcagt |
11225229 |
T |
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| Q |
108 |
ttgaagaatctttttcaattaaacaatcaacttacaatcagataaacattaaaca |
162 |
Q |
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| T |
11225228 |
ttgcagaatccttttcaattaaacaaccaacttacattcaggtacacatcaaaca |
11225174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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