View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11881_high_4 (Length: 337)
Name: NF11881_high_4
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 39984870 - 39984552
Alignment:
| Q |
10 |
gcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaagg |
109 |
Q |
| |
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||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
39984870 |
gcagagaagtacaagtcggaagatgaagagcataagaagaaggtcgaggccaagaatgcattggaaaactatgcatacaacatgaggaacaccattaagg |
39984771 |
T |
|
| Q |
110 |
atgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcaga |
209 |
Q |
| |
|
|||| || |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39984770 |
atgaaaaaattgcaggaaagcttgattcggatgacaaaaagaagatcgaggacaccattgaggctgctatccagtggctagatgccaaccagcttgcaga |
39984671 |
T |
|
| Q |
210 |
ggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgct |
309 |
Q |
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||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39984670 |
ggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgct |
39984571 |
T |
|
| Q |
310 |
gcagcagatgatgatgatg |
328 |
Q |
| |
|
|| | | ||||||||||| |
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|
| T |
39984570 |
gctcccggtgatgatgatg |
39984552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 8018384 - 8018634
Alignment:
| Q |
37 |
gaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgatt |
136 |
Q |
| |
|
||||| || |||||||| || || |||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| |
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| T |
8018384 |
gaacacaaaaagaaggttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcac |
8018483 |
T |
|
| Q |
137 |
ccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaa |
236 |
Q |
| |
|
| || ||||| ||||||||||| || | ||||| ||||| || |||||| | || ||||||| | |||||||| ||||||||||| || |||||||| |
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| T |
8018484 |
ctgaggacaaaaagaagattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaa |
8018583 |
T |
|
| Q |
237 |
ggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
287 |
Q |
| |
|
|||| | || || | |||||||| ||||||||||||||||| |||||||| |
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|
| T |
8018584 |
ggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtgg |
8018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
142 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaat |
241 |
Q |
| |
|
||||||||| |||||||||| | ||||||| || || || ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| |
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|
| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
|
| Q |
242 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
287 |
Q |
| |
|
| || | |||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 8101892 - 8101782
Alignment:
| Q |
9 |
agcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaag |
108 |
Q |
| |
|
||||||||| |||||| || ||||| || || ||||||||||| ||||| ||||| | ||||| || ||||||||||||||||| ||||| ||||| |
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|
| T |
8101892 |
agcagagaaatacaagagtgaagatgaggagcacaagaagaaggttgaggcaaagaactccttggagaactatgcatacaacatgagaaacaccattaaa |
8101793 |
T |
|
| Q |
109 |
gatgacaagat |
119 |
Q |
| |
|
|| || ||||| |
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|
| T |
8101792 |
gacgagaagat |
8101782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 17649261 - 17649568
Alignment:
| Q |
10 |
gcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaagg |
109 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||| || || ||| |||||||||||||||||| ||| |||||||||||||||| ||||| | |
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|
| T |
17649261 |
gcagagaagtacaagtcggaagatgaagagcataagtag---gttaaggacaagaatgcattggaaaactat----acaacatgaggaacaccattaatg |
17649353 |
T |
|
| Q |
110 |
atgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcaga |
209 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| | | |
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|
| T |
17649354 |
atgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgaggacaccattgaggctgctatccagtggctagaccc-aaccagcttgaata |
17649449 |
T |
|
| Q |
210 |
ggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgct |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
17649450 |
ggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaaccctatcattgccaagatgtaccaaggtggtgcaggtcttgacatggatgcc |
17649549 |
T |
|
| Q |
310 |
gcagcagatgatgatgatg |
328 |
Q |
| |
|
|| ||| ||||||||||| |
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|
| T |
17649550 |
gctccaggtgatgatgatg |
17649568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 304
Target Start/End: Original strand, 17706664 - 17706911
Alignment:
| Q |
50 |
aggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaa |
149 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| |||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||| |
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|
| T |
17706664 |
aggttgaggccaagaatgctatggaaaactat----acaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagacaagaa |
17706759 |
T |
|
| Q |
150 |
gaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagt |
249 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
17706760 |
aa---ttgaggacaccattgaggctactatccggtggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggt |
17706856 |
T |
|
| Q |
250 |
gtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
17706857 |
gtctgcaaccctatcattgccaagatgtaccaaggtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 17722080 - 17722122
Alignment:
| Q |
31 |
gatgaagaacataagaagaaggtcgaggccaagaatgcattgg |
73 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17722080 |
gatgaagagcataagaaggaggttgaggccaagaatgcattgg |
17722122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 23588683 - 23588953
Alignment:
| Q |
16 |
aagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgaca |
115 |
Q |
| |
|
||||||||||| ||||| || || || || ||||| || ||||||||||||||| | || || ||||| |||||||||||||||||||| || || |||| |
|
|
| T |
23588683 |
aagtacaagtctgaggacgaggagcacaaaaagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgaca |
23588782 |
T |
|
| Q |
116 |
agattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcaga |
215 |
Q |
| |
|
||||||| ||| | | | ||||| |||||||| ||||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| || |
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|
| T |
23588783 |
agattgcttcgaagttgtctgctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctga |
23588882 |
T |
|
| Q |
216 |
tgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
286 |
Q |
| |
|
||| |||||||||||||||||||| |||| | | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
23588883 |
tgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 23597535 - 23597805
Alignment:
| Q |
16 |
aagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgaca |
115 |
Q |
| |
|
|||||||| ||||||||||| || || || | |||||| |||||||| ||||| | || || ||||| |||||||||||||||||||| || || |||| |
|
|
| T |
23597535 |
aagtacaaatccgaggatgaggagcacaaaaggaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgaca |
23597634 |
T |
|
| Q |
116 |
agattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcaga |
215 |
Q |
| |
|
||||||| ||| | | ||||| |||||||| ||||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| || |
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|
| T |
23597635 |
agattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctga |
23597734 |
T |
|
| Q |
216 |
tgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtg |
286 |
Q |
| |
|
||| |||||||||||||||||||| |||| || | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
23597735 |
tgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 54395647 - 54395536
Alignment:
| Q |
10 |
gcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaagg |
109 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||| || ||||| |||||| || | || |||||||| || || |||||||| |||||||||| |
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|
| T |
54395647 |
gcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaattatgcttataatatgaggaatacaattaagg |
54395548 |
T |
|
| Q |
110 |
atgacaagattg |
121 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
54395547 |
atgagaagattg |
54395536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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