View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11881_high_5 (Length: 299)

Name: NF11881_high_5
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11881_high_5
NF11881_high_5
[»] chr5 (3 HSPs)
chr5 (17-155)||(39342281-39342419)
chr5 (187-293)||(39342451-39342557)
chr5 (194-232)||(38749580-38749618)
[»] chr8 (4 HSPs)
chr8 (249-293)||(36450698-36450742)
chr8 (254-293)||(13436914-13436953)
chr8 (247-285)||(31557065-31557103)
chr8 (249-285)||(29447051-29447087)
[»] chr6 (1 HSPs)
chr6 (249-285)||(21395265-21395301)
[»] chr4 (2 HSPs)
chr4 (249-293)||(17425351-17425395)
chr4 (249-293)||(17876237-17876281)
[»] chr1 (4 HSPs)
chr1 (249-285)||(6612112-6612148)
chr1 (249-293)||(1486648-1486692)
chr1 (249-285)||(16297233-16297269)
chr1 (249-285)||(40258885-40258921)
[»] chr2 (1 HSPs)
chr2 (187-232)||(18570969-18571014)
[»] chr7 (3 HSPs)
chr7 (194-238)||(1934955-1934999)
chr7 (249-285)||(9778576-9778612)
chr7 (249-285)||(28155625-28155661)
[»] chr3 (4 HSPs)
chr3 (249-285)||(1389909-1389945)
chr3 (196-232)||(12704674-12704710)
chr3 (249-285)||(15999962-15999998)
chr3 (261-293)||(28918086-28918118)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 39342281 - 39342419
Alignment:
Q  17 caacatcaaggtttttaagcctctacaaccacattcaggctgcattgactatatttaaccacgattttctgcaatttcaaaaatcacagacacaaatgct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39342281 caacatcaaggtttttaagcctctacaaccacattcaggctgcattgactatatttaaccacgattttcttcaatttcaaaaatcacagacacaaatgct 39342380  T
Q  117 attcaaaccgtgttcccatctatgaagcacgggtatagc 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39342381 attcaaaccgtgttcccatctatgaagcacgggtatagc 39342419  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 39342451 - 39342557
Alignment:
Q  187 gtcaactccgataataatttgaaaatttgacataattcaatgtaatgatgtgccggtgtccatgtcagacaccaggacacgcctaatccaaggagtgtct 286  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39342451 gtcaactccgataataatttgaaaaattgacataattcaatgtaatgatgtgccggtgtccatgtcagacaccgggacacgcctaatccaaggagtgtct 39342550  T
Q  287 ctgcttc 293  Q
    || ||||    
T  39342551 ctacttc 39342557  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 38749618 - 38749580
Alignment:
Q  194 ccgataataatttgaaaatttgacataattcaatgtaat 232  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  38749618 ccgataataatttgaaaaaatgacataattcaatgtaat 38749580  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 36450742 - 36450698
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtctctgcttc 293  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||    
T  36450742 tgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttc 36450698  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 13436953 - 13436914
Alignment:
Q  254 gacaccaggacacgcctaatccaaggagtgtctctgcttc 293  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  13436953 gacaccgggacacgcctaatccaaggagtgtctgtgcttc 13436914  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 31557065 - 31557103
Alignment:
Q  247 catgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  31557065 catgtccgacaccaggacacgcctaatccaaggtgtgtc 31557103  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 29447087 - 29447051
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||||||||||||||||||| |||||||||    
T  29447087 tgtctgacaccaggacacgcctaatcctaggagtgtc 29447051  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 21395301 - 21395265
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21395301 tgtcggacaccaggacacgcctaatccaaggagtgtc 21395265  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 17425395 - 17425351
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtctctgcttc 293  Q
    |||||||||| |||||||||||||||| |||||||||| ||||||    
T  17425395 tgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttc 17425351  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 17876237 - 17876281
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtctctgcttc 293  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||    
T  17876237 tgtccgacaccaggacacacctaatccaaggagtgtctgtgcttc 17876281  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 6612148 - 6612112
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6612148 tgtccgacaccaggacacgcctaatccaaggagtgtc 6612112  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 1486692 - 1486648
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtctctgcttc 293  Q
    |||| |||||| ||||||||||||||| |||||||||| ||||||    
T  1486692 tgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttc 1486648  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 16297269 - 16297233
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||||||||||||||||||| |||||||||    
T  16297269 tgtccgacaccaggacacgcctaatccgaggagtgtc 16297233  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 40258921 - 40258885
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||||||||||||||||||| |||||||||    
T  40258921 tgtccgacaccaggacacgcctaatccgaggagtgtc 40258885  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 18570969 - 18571014
Alignment:
Q  187 gtcaactccgataataatttgaaaatttgacataattcaatgtaat 232  Q
    |||||| ||||||||||||||| ||  |||||||||||||||||||    
T  18570969 gtcaacaccgataataatttgagaaaatgacataattcaatgtaat 18571014  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 1934955 - 1934999
Alignment:
Q  194 ccgataataatttgaaaatttgacataattcaatgtaatgatgtg 238  Q
    |||||||||||||| ||| ||||||||||| |||||||| |||||    
T  1934955 ccgataataatttgtaaaattgacataattgaatgtaatcatgtg 1934999  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 9778576 - 9778612
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||| |||||||||||||||||||||||||    
T  9778576 tgtccgacaccgggacacgcctaatccaaggagtgtc 9778612  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 28155625 - 28155661
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  28155625 tgtcggacaccaggacacgcctaatccaaggaatgtc 28155661  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 1389909 - 1389945
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1389909 tgtccgacaccaggacatgcctaatccaaggagtgtc 1389945  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 12704710 - 12704674
Alignment:
Q  196 gataataatttgaaaatttgacataattcaatgtaat 232  Q
    ||||||||||||||||  |||||||||||||||||||    
T  12704710 gataataatttgaaaaaatgacataattcaatgtaat 12704674  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 15999998 - 15999962
Alignment:
Q  249 tgtcagacaccaggacacgcctaatccaaggagtgtc 285  Q
    |||| |||||| |||||||||||||||||||||||||    
T  15999998 tgtccgacaccgggacacgcctaatccaaggagtgtc 15999962  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 28918086 - 28918118
Alignment:
Q  261 ggacacgcctaatccaaggagtgtctctgcttc 293  Q
    ||||||||||||||||||||||||| |||||||    
T  28918086 ggacacgcctaatccaaggagtgtccctgcttc 28918118  T

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