View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11881_high_9 (Length: 240)

Name: NF11881_high_9
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11881_high_9
NF11881_high_9
[»] chr4 (21 HSPs)
chr4 (17-179)||(51676002-51676159)
chr4 (186-235)||(41460526-41460575)
chr4 (188-232)||(20574848-20574892)
chr4 (183-231)||(10109359-10109407)
chr4 (186-225)||(50297625-50297664)
chr4 (187-225)||(28675674-28675712)
chr4 (189-231)||(30537918-30537960)
chr4 (187-232)||(30255177-30255222)
chr4 (189-232)||(38794135-38794178)
chr4 (186-232)||(14958326-14958372)
chr4 (183-225)||(22019523-22019565)
chr4 (190-232)||(22409323-22409365)
chr4 (190-232)||(42898962-42899004)
chr4 (189-230)||(10305149-10305190)
chr4 (191-240)||(17268771-17268820)
chr4 (188-228)||(14603007-14603047)
chr4 (198-226)||(25231430-25231458)
chr4 (190-222)||(26014861-26014893)
chr4 (196-232)||(32318654-32318690)
chr4 (189-225)||(39414520-39414556)
chr4 (185-225)||(53133595-53133635)
[»] chr5 (9 HSPs)
chr5 (189-240)||(25037236-25037287)
chr5 (189-240)||(28085299-28085350)
chr5 (190-239)||(42655897-42655946)
chr5 (187-239)||(32135938-32135990)
chr5 (188-239)||(39796118-39796168)
chr5 (189-225)||(29429740-29429776)
chr5 (197-240)||(3344865-3344908)
chr5 (186-225)||(28735261-28735300)
chr5 (194-226)||(4295878-4295910)
[»] chr2 (14 HSPs)
chr2 (183-240)||(27414038-27414095)
chr2 (188-232)||(40534358-40534402)
chr2 (189-238)||(44721344-44721393)
chr2 (185-240)||(6590553-6590608)
chr2 (184-225)||(410032-410073)
chr2 (191-240)||(3888736-3888785)
chr2 (187-240)||(11941619-11941672)
chr2 (188-225)||(12972684-12972721)
chr2 (191-225)||(5559712-5559746)
chr2 (188-226)||(13242258-13242296)
chr2 (184-238)||(19159636-19159689)
chr2 (195-225)||(44966006-44966036)
chr2 (187-232)||(32227576-32227621)
chr2 (192-232)||(14776411-14776451)
[»] chr8 (12 HSPs)
chr8 (183-231)||(11257994-11258042)
chr8 (186-230)||(30069691-30069735)
chr8 (186-232)||(31451376-31451422)
chr8 (189-232)||(38869896-38869939)
chr8 (186-232)||(26014835-26014881)
chr8 (195-240)||(24991859-24991904)
chr8 (186-225)||(8114292-8114331)
chr8 (186-228)||(374334-374376)
chr8 (189-231)||(9402862-9402904)
chr8 (190-239)||(2540243-2540292)
chr8 (189-226)||(9399660-9399697)
chr8 (187-232)||(36660721-36660766)
[»] chr3 (22 HSPs)
chr3 (188-238)||(38773643-38773693)
chr3 (186-232)||(37238756-37238802)
chr3 (187-232)||(51980683-51980728)
chr3 (190-232)||(972550-972592)
chr3 (186-232)||(28963352-28963398)
chr3 (187-228)||(12060213-12060254)
chr3 (187-228)||(12568598-12568639)
chr3 (187-228)||(13545062-13545103)
chr3 (187-232)||(13863580-13863625)
chr3 (189-225)||(43782077-43782113)
chr3 (189-232)||(28945959-28946002)
chr3 (186-232)||(36923497-36923543)
chr3 (188-226)||(37387474-37387512)
chr3 (195-225)||(41519477-41519507)
chr3 (190-232)||(52915450-52915492)
chr3 (188-225)||(24355447-24355484)
chr3 (190-239)||(25556545-25556594)
chr3 (187-232)||(43310592-43310637)
chr3 (186-226)||(26848704-26848744)
chr3 (185-225)||(28451859-28451899)
chr3 (189-225)||(50129176-50129212)
chr3 (196-232)||(52378712-52378748)
[»] chr7 (18 HSPs)
chr7 (190-235)||(10679234-10679279)
chr7 (189-232)||(38073565-38073608)
chr7 (188-232)||(11667121-11667165)
chr7 (188-228)||(27390149-27390189)
chr7 (189-232)||(38652630-38652673)
chr7 (187-232)||(20884447-20884492)
chr7 (187-232)||(21148528-21148573)
chr7 (186-225)||(26080961-26081000)
chr7 (186-225)||(26104748-26104787)
chr7 (186-225)||(45837942-45837981)
chr7 (183-225)||(7907586-7907628)
chr7 (187-225)||(25119873-25119911)
chr7 (192-234)||(45278827-45278869)
chr7 (185-230)||(38073709-38073754)
chr7 (188-225)||(43131878-43131915)
chr7 (184-225)||(48633892-48633933)
chr7 (190-226)||(39837393-39837429)
chr7 (185-225)||(48723221-48723261)
[»] chr1 (14 HSPs)
chr1 (187-232)||(3491404-3491449)
chr1 (189-232)||(5198934-5198977)
chr1 (189-235)||(27211439-27211485)
chr1 (185-232)||(21276529-21276576)
chr1 (187-225)||(39412434-39412472)
chr1 (194-232)||(48022852-48022890)
chr1 (190-235)||(13132098-13132143)
chr1 (187-232)||(52141467-52141512)
chr1 (188-235)||(48217527-48217574)
chr1 (183-228)||(5799724-5799769)
chr1 (188-225)||(32441607-32441644)
chr1 (192-232)||(943225-943265)
chr1 (194-226)||(7473194-7473226)
chr1 (190-226)||(8981830-8981866)
[»] chr6 (4 HSPs)
chr6 (188-240)||(154318-154370)
chr6 (188-239)||(7269668-7269719)
chr6 (187-232)||(33972582-33972627)
chr6 (187-232)||(12141683-12141728)
[»] scaffold0116 (1 HSPs)
scaffold0116 (187-225)||(2948-2986)
[»] scaffold0050 (1 HSPs)
scaffold0050 (185-226)||(37313-37354)
[»] scaffold0007 (1 HSPs)
scaffold0007 (188-232)||(260286-260330)
[»] scaffold0005 (1 HSPs)
scaffold0005 (188-228)||(214331-214371)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 51676159 - 51676002
Alignment:
Q  17 attgggaatgcctcccaaacttagtattgggattcattttgatttaattaggtgtaaaatatcttactttattactcaacactcatgaaacttgttaaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51676159 attgggaatgcctcccaaacttagtattgggattcattttgatttaattaggtgtaaaatatcttactttattactcaacactcgtgaaacttgttaaag 51676060  T
Q  117 tgaaagcacctaatcaaatttagatgtgcatgtccaacatttttcacactgatctttcattaa 179  Q
    ||||||||||||||||||     ||||||||||||||||||||||||||| ||||||||||||    
T  51676059 tgaaagcacctaatcaaa-----atgtgcatgtccaacatttttcacactaatctttcattaa 51676002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 41460526 - 41460575
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaaatt 235  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  41460526 taagggtcatgttaacttgtgcccttagagcacatgttaaacattaaatt 41460575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 20574848 - 20574892
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  20574848 agggtcatgttaacttgtgcccttagggcacatgttaaacattaa 20574892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10109407 - 10109359
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaaacatta 231  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  10109407 aaataagggtcatgttaacttgtgtctttagggcacatgttaaacatta 10109359  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 50297625 - 50297664
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  50297625 taagggtcatgttaacttgtgcccttagggcacatgttaa 50297664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 28675674 - 28675712
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  28675674 aagggtcatgttaacttgtgcccttagggcacatgttaa 28675712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 30537918 - 30537960
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacatta 231  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  30537918 gggtcatgttaacttgttcccttagggcacatgttaaacatta 30537960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 30255177 - 30255222
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||    
T  30255177 aagggtaatgttaacttgtgcccttagggcacattttaaacattaa 30255222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 38794178 - 38794135
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||    
T  38794178 gggtcatgttaacttgtgcccttagggcccatgttaagcattaa 38794135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 14958326 - 14958372
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||| ||||||||||||| |||||| ||||||||| |||||||    
T  14958326 taagggtcttgttaacttgtgcccttaggacacatgttagacattaa 14958372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 22019565 - 22019523
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||| ||||||||||||||||||| || ||||||||||||||    
T  22019565 aaatatgggtcatgttaacttgtgccctaagggcacatgttaa 22019523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 22409323 - 22409365
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  22409323 ggtcatgttaacttgtgcccttaatgcacatgttaaacattaa 22409365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 42898962 - 42899004
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  42898962 ggtcatcttaacttgtgtccttagggcacatgttaaacattaa 42899004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 10305149 - 10305190
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacatt 230  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  10305149 gggtcatgctaacttgtgctcttatggcacatgttaaccatt 10305190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 17268771 - 17268820
Alignment:
Q  191 gtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||||||||||  |||||||||||||||| |||| |||| ||||    
T  17268771 gtcatgttaacttgtgcctttagggcacatgttaagcattcaattattgc 17268820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 14603007 - 14603047
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    ||||| ||||||| ||||||||||| |||||||||||||||    
T  14603007 agggttatgttaatttgtgctcttatggcacatgttaaaca 14603047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 25231458 - 25231430
Alignment:
Q  198 taacttgtgctcttagggcacatgttaaa 226  Q
    |||||||||||||||||||||||||||||    
T  25231458 taacttgtgctcttagggcacatgttaaa 25231430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 26014893 - 26014861
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgt 222  Q
    ||||||||||||||||||||||| |||||||||    
T  26014893 ggtcatgttaacttgtgctcttaaggcacatgt 26014861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 32318690 - 32318654
Alignment:
Q  196 gttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32318690 gttaacttgtgcccttagggcacatgttaagcattaa 32318654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 39414556 - 39414520
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  39414556 gggtcatgttaacttgtgcccttagggcacaagttaa 39414520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 53133635 - 53133595
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  53133635 ataagggtagtgttaacttgtgcccttagggcacatgttaa 53133595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 25037236 - 25037287
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25037236 gggtcatgttaacttgtgctcttaggacacatgttaaacattaaattcttgc 25037287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 28085350 - 28085299
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  28085350 gggtcatgttaacttgtgctcttagggcacatgttaagcattaaatttttgc 28085299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 42655897 - 42655946
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  42655897 ggtcatgttaacttgtgcccttaagacacatgttaaacattaaattcttg 42655946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 32135990 - 32135938
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    ||||||||||||||||||||   |||||| |||||||||||||||||||||||    
T  32135990 aagggtcatgttaacttgtgtctttagggtacatgttaaacattaaattcttg 32135938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 39796168 - 39796118
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  39796168 agggtcgtattaacttgtg-tcttagggcacatgttaaacattaaattcttg 39796118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 29429776 - 29429740
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29429776 gggtcatgttaacttgtgcccttagggcacatgttaa 29429740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 3344865 - 3344908
Alignment:
Q  197 ttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||    
T  3344865 ttaacttgtgcccttagagcacatgttaaacattaaatttttgc 3344908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 28735261 - 28735300
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28735261 taagggtcatgttaacttgtgcccttagggcacaagttaa 28735300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 4295910 - 4295878
Alignment:
Q  194 atgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||||||||| |||||||||||||||||||    
T  4295910 atgttaacttgtgttcttagggcacatgttaaa 4295878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 27414038 - 27414095
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  27414038 aaataagagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgc 27414095  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 40534402 - 40534358
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  40534402 agggttatgttaacttgtgctcttagggcacatgttaaacattaa 40534358  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 44721344 - 44721393
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaaattctt 238  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  44721344 gggtcatgttaacttgtgcccttagagcacatgttaagcattaaattctt 44721393  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 6590553 - 6590608
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||| ||||    
T  6590553 ataagggtcatgttaacttgtgcctttagggcacacgttaagcattaaatttttgc 6590608  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 410073 - 410032
Alignment:
Q  184 aataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  410073 aataagggtcatgttaacttgtgccctaagggcacatgttaa 410032  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 3888736 - 3888785
Alignment:
Q  191 gtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||| |||||| || ||||||||| |||||||||||||||||||    
T  3888736 gtcatgttaatttgtgccctcagggcacatattaaacattaaattcttgc 3888785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 11941672 - 11941619
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||||||| ||||||  ||||| |||||||||| ||||||||||||||    
T  11941672 aagggtcatgttaaattgtgcctttaggacacatgttaagcattaaattcttgc 11941619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 12972684 - 12972721
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12972684 agggtcatgctaacttgtgctcttagggcacatgttaa 12972721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 5559746 - 5559712
Alignment:
Q  191 gtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||| ||||||||||||||    
T  5559746 gtcatgttaacttgtgctctaagggcacatgttaa 5559712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 13242296 - 13242258
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  13242296 agggtcatgttaacttgtgcacttatggcacatgttaaa 13242258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 19159689 - 19159636
Alignment:
Q  184 aataagggtcatgttaacttgtgctcttagggcacatgttaaacattaaattctt 238  Q
    ||||||||| ||||||||||||||| | |||| |||||||||| |||||||||||    
T  19159689 aataagggt-atgttaacttgtgctataagggtacatgttaaatattaaattctt 19159636  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 44966006 - 44966036
Alignment:
Q  195 tgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||||||||||||    
T  44966006 tgttaacttgtgctcttagggcacatgttaa 44966036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 32227621 - 32227576
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||| |||||| ||||||| |||||||||||||||| ||||||    
T  32227621 aagggtcgtgttaatttgtgcttttagggcacatgttaagcattaa 32227576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 14776451 - 14776411
Alignment:
Q  192 tcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  14776451 tcatgttaacttgtgtccttaggacacatgttaaacattaa 14776411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 11258042 - 11257994
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaaacatta 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11258042 aaataagggtcatgttaacttgtgcccttagggcacatgttaaacatta 11257994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 30069691 - 30069735
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacatt 230  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  30069691 taagggtcatgttaacttgtgctcttagggcacatgttaagcatt 30069735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 31451422 - 31451376
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  31451422 taaggatcatgttaacttgtgctcttagggcacatgttaagcattaa 31451376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 38869939 - 38869896
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  38869939 gggtcatgttaacttgtgcccttaaggcacatgttaaacattaa 38869896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 26014835 - 26014881
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||    
T  26014835 taagggtcatgttaacttgtacccttagggcacatgttaagcattaa 26014881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 24991904 - 24991859
Alignment:
Q  195 tgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||    
T  24991904 tgttaaattatgcccttagggcacatgttaaacattaaattcttgc 24991859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 8114292 - 8114331
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  8114292 taagggtcatgttaacttgtgccctaagggcacatgttaa 8114331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 374334 - 374376
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  374334 taagggtcatgctaacttgtgtccttagggcacatgttaaaca 374376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 9402862 - 9402904
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacatta 231  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  9402862 gggtcatgttaacttctgcccttagggcacatgttaagcatta 9402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 2540292 - 2540243
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    |||||||||||||||| | |||||  |||||||||| |||||||||||||    
T  2540292 ggtcatgttaacttgtacccttagaacacatgttaagcattaaattcttg 2540243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 9399697 - 9399660
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  9399697 gggtcatgttaacttgtgcccttagggcacaagttaaa 9399660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 36660766 - 36660721
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| |||| |||| ||||||| ||||||    
T  36660766 aagggtcatgttaacttgtgcccttaaggcatatgttaaccattaa 36660721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 38773693 - 38773643
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaaattctt 238  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  38773693 agggtcatgttaacttgtgcccttagggcacatgttaagcattaaattctt 38773643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 37238756 - 37238802
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  37238756 taagggtcatgttaacttgtgcccttagggcacatgttaagcattaa 37238802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 51980683 - 51980728
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  51980683 aagggtcatgttaacttgtgcccttagggcacatgttaagcattaa 51980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 972592 - 972550
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  972592 ggtcatgttaacttgtgcttttagggcacatgttaagcattaa 972550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 28963352 - 28963398
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||    
T  28963352 taagggtcatgttaacttgtgttcttagggcacatgtttagcattaa 28963398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 12060213 - 12060254
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  12060213 aagggtcatgttaacttgtgctctaagggcatatgttaaaca 12060254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 12568598 - 12568639
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  12568598 aagggtcatgttaaattatgctcttagggcacatgttaaaca 12568639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 13545062 - 13545103
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  13545062 aagggtcatgttaaattatgctcttagggcacatgttaaaca 13545103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 13863580 - 13863625
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||    
T  13863580 aagggtcatgttaacttgtgcccttaggacacatgttaagcattaa 13863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 43782077 - 43782113
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43782077 gggtcttgttaacttgtgctcttagggcacatgttaa 43782113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 28946002 - 28945959
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||    
T  28946002 gggtcatgttaacttgtgcccttaaggcatatgttaaacattaa 28945959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 36923497 - 36923543
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||| ||| |||||  |||||||||||||||||    
T  36923497 taagggtcatgttaacttatgcccttagtacacatgttaaacattaa 36923543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 37387512 - 37387474
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    |||||||||||||||||||| || |||||||||||||||    
T  37387512 agggtcatgttaacttgtgccctaagggcacatgttaaa 37387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 41519477 - 41519507
Alignment:
Q  195 tgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||||||||||||||    
T  41519477 tgttaacttgtgctcttagggcacatgttaa 41519507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 52915450 - 52915492
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  52915450 ggtcatgttaacttgtgctcttatgacacatgttaagcattaa 52915492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 24355447 - 24355484
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  24355447 agggtcatgttaacttgtgcccttaaggcacatgttaa 24355484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 25556594 - 25556545
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    ||||||| ||||||||||  ||||||||||| |||| |||||||||||||    
T  25556594 ggtcatgctaacttgtgcctttagggcacattttaagcattaaattcttg 25556545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 43310637 - 43310592
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||| |||||||||| || |||||||||||||| ||||||    
T  43310637 aagggtcatgctaacttgtgccctcagggcacatgttaagcattaa 43310592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 26848744 - 26848704
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  26848744 taagggtcatgttaacttgtgatctttgggcacatattaaa 26848704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 28451899 - 28451859
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||  |||||||||||||| |||||||||||||||||    
T  28451899 ataagggaaatgttaacttgtgcccttagggcacatgttaa 28451859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 50129212 - 50129176
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  50129212 gggtcatgttaacttgtgcccttagggcacaagttaa 50129176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 52378748 - 52378712
Alignment:
Q  196 gttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||  |||||||||||||||||||||||    
T  52378748 gttaacttgtgcctttagggcacatgttaaacattaa 52378712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 10679279 - 10679234
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaaatt 235  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  10679279 ggtcatgttaacttgtgcccttagggcacatgttaaacattaaatt 10679234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 38073565 - 38073608
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  38073565 gggtcatgttaacttgtgcccttagggcacatgttaaacattaa 38073608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 11667165 - 11667121
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  11667165 agggtcatgttaacttgtgcccttagggcacatgttaagcattaa 11667121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 27390149 - 27390189
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  27390149 agggtcatgttaacttgtgctcttagggcacaagttaaaca 27390189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 38652630 - 38652673
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||    
T  38652630 gggtcatgttaacttgtgcccttagggtacatgttaaacattaa 38652673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 20884447 - 20884492
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  20884447 aagggtcatgttaacttgtgcccttagggtacatgttaagcattaa 20884492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21148573 - 21148528
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||| |||||| || |||||||||||||||||||||    
T  21148573 aagggtcatgttaatttgtgccctaagggcacatgttaaacattaa 21148528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 26080961 - 26081000
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  26080961 taagggtcatgttaactcgtgctctaagggcacatgttaa 26081000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 26104748 - 26104787
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  26104748 taagggtcatgttaactcgtgctctaagggcacatgttaa 26104787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 45837981 - 45837942
Alignment:
Q  186 taagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  45837981 taagggtcatgctaacttgtgcccttagggcacatgttaa 45837942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 7907628 - 7907586
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||    
T  7907628 aaatatgggtcatgttaacttgtgcccttaaggcacatgttaa 7907586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 25119911 - 25119873
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  25119911 aagggtcatgttaacttgtgccctaagggcacatgttaa 25119873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 45278869 - 45278827
Alignment:
Q  192 tcatgttaacttgtgctcttagggcacatgttaaacattaaat 234  Q
    |||||||||||||||| | ||||||||||||||| ||||||||    
T  45278869 tcatgttaacttgtgcccctagggcacatgttaatcattaaat 45278827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 38073754 - 38073709
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaaacatt 230  Q
    |||||||  |||||||||||||| ||||||||||||||||| ||||    
T  38073754 ataagggaaatgttaacttgtgcccttagggcacatgttaagcatt 38073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 43131878 - 43131915
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  43131878 agggtcatgttaacttgtgcccttagggcacaagttaa 43131915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 48633892 - 48633933
Alignment:
Q  184 aataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  48633892 aataagggtagtgttaacttgtgcccttagggcacatgttaa 48633933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 39837393 - 39837429
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  39837393 ggtcatgttaacttgtgcccttagggcatatgttaaa 39837429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 48723221 - 48723261
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||||| |||||||||| |||| ||||||||||||    
T  48723221 ataagggtcatgctaacttgtgcccttatggcacatgttaa 48723261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 3491404 - 3491449
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3491404 aagggtcatgttaacttgtgcccttagggcacatgttaaacattaa 3491449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 5198977 - 5198934
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  5198977 gggtcatattaacttgtgctcttagggcacatgttaaacattaa 5198934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 27211485 - 27211439
Alignment:
Q  189 gggtcatgttaacttgtgctcttagggcacatgttaaacattaaatt 235  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  27211485 gggtcatgttaacttgtgcccttagggcacatgttaagcattaaatt 27211439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 21276529 - 21276576
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  21276529 ataagggtcatgttaacttgtgcccttaggacacatgttaagcattaa 21276576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 39412434 - 39412472
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39412434 aagggtaatgttaacttgtgctcttagggcacatgttaa 39412472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 48022890 - 48022852
Alignment:
Q  194 atgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  48022890 atgttaacttgtgcccttagggcacatgttaaacattaa 48022852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 13132098 - 13132143
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaacattaaatt 235  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||    
T  13132098 ggtcatgttaacttgtgcccttagggcacattttaagcattaaatt 13132143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 52141467 - 52141512
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  52141467 aagggtcatgttaacttgtgcccttagggcatatgttaagcattaa 52141512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 48217527 - 48217574
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaaatt 235  Q
    |||||||||||| ||||||| |||||||||| |||||| |||||||||    
T  48217527 agggtcatgttatcttgtgcccttagggcacgtgttaagcattaaatt 48217574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 5799724 - 5799769
Alignment:
Q  183 aaataagggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    |||||| ||||||| |||||||||| |||| |||||||||||||||    
T  5799724 aaataatggtcatgctaacttgtgcccttatggcacatgttaaaca 5799769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 32441607 - 32441644
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32441607 agggtcttgttaacttgtgcccttagggcacatgttaa 32441644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 943265 - 943225
Alignment:
Q  192 tcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||| || |||| ||||||||||||||||    
T  943265 tcatgttaacttgtgccctcagggtacatgttaaacattaa 943225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 7473194 - 7473226
Alignment:
Q  194 atgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||||||||||||||| |||||||||||||    
T  7473194 atgttaacttgtgctcttatggcacatgttaaa 7473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 8981866 - 8981830
Alignment:
Q  190 ggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  8981866 ggtcatgataacttgtgctcttaaggcacatgttaaa 8981830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 154370 - 154318
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttgc 240  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||||||||    
T  154370 agggtcatgttaacttgtgcccttaagacacatgttaaacattaaattcttgc 154318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 7269668 - 7269719
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaaattcttg 239  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  7269668 agggtcatattaacttgtgcctttagggcacatgttaaacattaaattcttg 7269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 33972582 - 33972627
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  33972582 aagggtcatgttaacttgtgctcttagagcacatgttaagcattaa 33972627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 12141683 - 12141728
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||||  ||| | |||||||||||||||||    
T  12141683 aagggtcatgttaacttgtgcatttaagacacatgttaaacattaa 12141728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 2948 - 2986
Alignment:
Q  187 aagggtcatgttaacttgtgctcttagggcacatgttaa 225  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  2948 aagggtcatggtaacttgtgttcttagggcacatgttaa 2986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 37354 - 37313
Alignment:
Q  185 ataagggtcatgttaacttgtgctcttagggcacatgttaaa 226  Q
    ||||||||  ||||| ||||||||||||||||||||||||||    
T  37354 ataagggtagtgttatcttgtgctcttagggcacatgttaaa 37313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 260286 - 260330
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaacattaa 232  Q
    |||||||||||||||||||| |||||||  |||||||| ||||||    
T  260286 agggtcatgttaacttgtgcccttagggtccatgttaagcattaa 260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 214371 - 214331
Alignment:
Q  188 agggtcatgttaacttgtgctcttagggcacatgttaaaca 228  Q
    ||||| ||||||| ||||||||||| |||||||||||||||    
T  214371 agggttatgttaatttgtgctcttatggcacatgttaaaca 214331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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