View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_low_1 (Length: 745)
Name: NF11881_low_1
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 65 - 727
Target Start/End: Original strand, 7380150 - 7380809
Alignment:
| Q |
65 |
aagtcatcttatgttgtgttgtgcaagttctccttaaatgagataagcacaaaggctgcgtgtggtactatactatgcaccccatgaatttaattaattt |
164 |
Q |
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| T |
7380150 |
aagtcatcttatgttgtgttgtgcaagttctccttaaatgagataagcacaaaggctgcgtgtggtactatactatgcaccccatgaatttaattaattt |
7380249 |
T |
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| Q |
165 |
atctagaaagtcagaaaggtgctacacctcatctcattcgtcatttggtcatatatgtagaacaagaaaaatacccttattccccaagatagtcacatgt |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7380250 |
atctagaaagtcagaaaggtgctacacctcatctcattcgtcatttggtcatatatgtagaacaagaaaaatacccttattcctcaagatagtcacatgt |
7380349 |
T |
|
| Q |
265 |
taatgttggactttaattaatagaaacctctagactatacctccatctcaaattaatccaaaccaccttaattaatctcccctttaaatattaaatccac |
364 |
Q |
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| T |
7380350 |
taatgttggactttaattaatagaaacctctagactatacctccatctcaaattaatccaaaccaccttaattaatctcccctttaaatattaaatccac |
7380449 |
T |
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| Q |
365 |
atctctttttctatccattctactccttcatcaaaaccaagcatctcctattttccctcctatatatttccctcttccaaaaccacaaaacattattctt |
464 |
Q |
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| T |
7380450 |
atctctttttctatccattctactccttcatcaaaaccaaccatctcctattttccctcctatatatttccctcttccaaaaccacaaaacattattc-t |
7380548 |
T |
|
| Q |
465 |
tccnnnnnnngaccaaaacattattttaacattacaacatccttaaatcttcattcttttcatatatatgggcactcttgtaggacatgtagctcctggt |
564 |
Q |
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| T |
7380549 |
tccaaaaaaagaccaaaacattattttaacattataacatacttaaatcttcattcttttc--atatatgggcactcttgtaggacatgtagctcctggt |
7380646 |
T |
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| Q |
565 |
tttgctttcttaatactagggctatggcaccttttcaaccacatcaaactccatattaaaaatccaaattcgtacatttcaccaacatggttcccaacat |
664 |
Q |
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| T |
7380647 |
tttgctttcttaatactagggctatggcaccttttcaaccacatcaaactccatattaaaaatccaaattcatacatttcaccaacatggttcccaacat |
7380746 |
T |
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| Q |
665 |
caaaattcaaatacctagaactttacctaatcatgttagccacaacagcttcaatctcaatgg |
727 |
Q |
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| T |
7380747 |
caaaattcaaatacctagaactttacctaatcatgttagccacaacagcttcaatctcaatgg |
7380809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7380022 - 7380078
Alignment:
| Q |
1 |
taactcaattaatagaaacaatacataatatatgtagggtttggtttaaatcctaaa |
57 |
Q |
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| T |
7380022 |
taactcaattaataaaaaaaatacatattatatgtaggatttggtttaaatcctaaa |
7380078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29791783 - 29791825
Alignment:
| Q |
1 |
taactcaattaatagaaacaatacataatatatgtagggtttg |
43 |
Q |
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| T |
29791783 |
taactcagttgatagaaacaatacataatatatgtaaggtttg |
29791825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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