View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_low_3 (Length: 405)
Name: NF11881_low_3
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 34974572 - 34974241
Alignment:
| Q |
18 |
attttgcttatcgataaaagtaactaaacaatactaattagttatgtattagatgtagttagtgtaccaaaacaaattatnnnnnnn--tgactggcgct |
115 |
Q |
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| T |
34974572 |
attttgcttatcgataaaagtaactaaacaatactaattagttatgtattagatgtagttagtgtaccaaaacaaattataaaaaaaaatgactagtgct |
34974473 |
T |
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| Q |
116 |
tgatgcttgtcggtgttagttttataggataggatttgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974472 |
tgatgcttgtcggtgttagttttataggataggatttgaactccgccatacagtgtcggattatgtaatattttgattaactaaggaattggatttttga |
34974373 |
T |
|
| Q |
216 |
aataaattacctcttactctcgtcatatccaatcagctaatgtcaacaatttttattttctttacataatacataacacaataaaagaacactgaatgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974372 |
aataaattacctcttactctcgtcatatccaatcagctaatgtcaaccatttttattttctttacataatacataacacaataaaagaacactgaatgaa |
34974273 |
T |
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| Q |
316 |
attgtaatgatacatttaaatatgttgggtat |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34974272 |
attgtaatgatacatttaaatatgttgggtat |
34974241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 24520039 - 24520071
Alignment:
| Q |
352 |
gtaataaaatattatcacgcaactaaaataaga |
384 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
24520039 |
gtaacaaaatattatcacgcaactaaaataaga |
24520071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 4579354 - 4579322
Alignment:
| Q |
352 |
gtaataaaatattatcacgcaactaaaataaga |
384 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
4579354 |
gtaacaaaatattatcacgcaactaaaataaga |
4579322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 5818527 - 5818559
Alignment:
| Q |
352 |
gtaataaaatattatcacgcaactaaaataaga |
384 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
5818527 |
gtaacaaaatattatcacgcaactaaaataaga |
5818559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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