View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_low_7 (Length: 282)
Name: NF11881_low_7
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 5604267 - 5604536
Alignment:
| Q |
7 |
atatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604267 |
atatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttct |
5604366 |
T |
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| Q |
107 |
tcgagatcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggatt |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604367 |
tcgagatcatctgattcaaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggatt |
5604466 |
T |
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| Q |
207 |
cagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctgcttc |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
5604467 |
cagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttc |
5604536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 5631103 - 5630834
Alignment:
| Q |
7 |
atatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5631103 |
atatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttct |
5631004 |
T |
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| Q |
107 |
tcgagatcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggatt |
206 |
Q |
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| T |
5631003 |
tcgagatcatctgattcaaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggatt |
5630904 |
T |
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| Q |
207 |
cagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctgcttc |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
5630903 |
cagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttc |
5630834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 5648589 - 5648327
Alignment:
| Q |
12 |
tacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttcttcgag |
111 |
Q |
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| T |
5648589 |
tacctcaaatcatgtctttcgtctaat--tgtaggtttgatggcggagttccaacgatgtctagctttaatttgtttcttggaggaaacgtttcttcgag |
5648492 |
T |
|
| Q |
112 |
atcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaa |
211 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
5648491 |
atcatctgattcaaaatttgttggagaaactatttcttcttgctcattggattgaaaatctgatgaagacatggtctcttcttcaacatgggattcagaa |
5648392 |
T |
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| Q |
212 |
attgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatctctgcttc |
276 |
Q |
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| T |
5648391 |
attgttgaagaaactgtttcttgttgatatatccagcgaaacccacactcttttatctctacttc |
5648327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 13168301 - 13168047
Alignment:
| Q |
12 |
tacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttcttcgag |
111 |
Q |
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|||||||||||| |||||| |||||| ||| | ||||| || ||||||||| ||| ||| ||||||||| ||||||| ||||||||||||||| || |
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| T |
13168301 |
tacctcaaatcacatgtttcgtctaat--tctagatttgatggcagagttccaaacatgcctagctttaatttgtttcttgaaggaattgtttcttctag |
13168204 |
T |
|
| Q |
112 |
atcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaagacaaggtttcttcttcatcattggattcagaa |
211 |
Q |
| |
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|||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
13168203 |
atcatctgattcaaaattttctggaggaactattacttcttgatcattggattgaaaatccgatgaagatgcaatttcttcttcatcatgggattcagaa |
13168104 |
T |
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| Q |
212 |
attgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatc |
268 |
Q |
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|||||| ||| |||||||||||| | ||| |||||| ||||||||||||||| |||| |
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| T |
13168103 |
attgttaaaggaactgtttcttccttatacatccagtgaaacccacactcttttatc |
13168047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 6307267 - 6307527
Alignment:
| Q |
12 |
tacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttctttcttggaggaattgtttcttcgag |
111 |
Q |
| |
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||||||| ||||| ||||||||||||| || |||||| || ||||||||| |||||||| ||||||||| ||| |||||||||||||||||| || |
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| T |
6307267 |
tacctcatatcatatgtttcatctaat--tcgaagtttgatggcagagttccaaagatgtctagctttaatttgtttgatggaggaattgtttcttctag |
6307364 |
T |
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| Q |
112 |
atcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaaaatccgatgaaga--ca----aggtttcttcttcatcattggat |
205 |
Q |
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|||||||||||||||| |||||||||||| | |||||||| | | |||||||||||||| |||||||| || |||||||||| ||||| ||| |
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| T |
6307365 |
atcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaaaatttgatgaagatgcagatgcagtttcttcttgatcatgagat |
6307464 |
T |
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| Q |
206 |
tcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatc |
268 |
Q |
| |
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||| |||||||||||| || |||||||| | |||||||||| |||| |||||||||| |||| |
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| T |
6307465 |
tcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatc |
6307527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 5554504 - 5554311
Alignment:
| Q |
68 |
atgtctatctttaatttctttcttggaggaattgtttcttcgagatcatctgattcaaaacttgttggaggaactatttcttcttgctcattggattgaa |
167 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||| |||||||||||| || ||||||||||||| |
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| T |
5554504 |
atgtctagctttaatttctttcttggaggaattgtgtcttctagagcatccgattcaaaatttgttggagaaactatttcttcatgatcattggattgaa |
5554405 |
T |
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| Q |
168 |
aatccgatgaagacaaggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctat |
267 |
Q |
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|| | |||||||||||||| |||||||||||| | |||||||||||||| |||||||| |||||| |||| |||||||||| ||| |
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| T |
5554404 |
aaac---------------ttcttcttcatcatgtgattcagaaattatcgaagaaactgtttcctcttgataaatccagtgaaatccacactcttttat |
5554320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 9862101 - 9862156
Alignment:
| Q |
213 |
ttgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttctatc |
268 |
Q |
| |
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|||||| || |||| |||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
9862101 |
ttgttggagcaactatttcttcttgatatatccagcgaaccccacactcttttatc |
9862156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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