View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_low_8 (Length: 274)
Name: NF11881_low_8
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 12569089 - 12569346
Alignment:
| Q |
17 |
tcaaatccaccacacacattcatcatcaaaatttcaagccctaataaaaaccataaaaaacaacgttacattcttcaaaatcacaaaaccaccctccacc |
116 |
Q |
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| T |
12569089 |
tcaaatccaccacacacattcatcatcaaaatttcaagccctaataaaaaccataaaaaacaacgttacattcttcaaaatcacaaaaccaccctccacc |
12569188 |
T |
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| Q |
117 |
atcctctcactaccacgaaccttatcacgcaagttatcatcaaaacgaagaaaaacaagccaaagatgcaatggtgaaagagaaatcgaaatcgaaacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12569189 |
atcctctcactaccacgaaccttatcacgcaagttatcatcaaagcgaagaaaaacaagccaaagatgcaaaggtgaaagagaaatcgaaatcgaaacca |
12569288 |
T |
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| Q |
217 |
gcacggtgaaaatcaaagacatcatacgttggaaatcgtttcgagatatacaacaacc |
274 |
Q |
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| T |
12569289 |
gcacggtgaaaatcaaagacatcatacgttggaaatcgtttcgagatatacaacaacc |
12569346 |
T |
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