View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11881_low_9 (Length: 254)
Name: NF11881_low_9
Description: NF11881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11881_low_9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 39950937 - 39950753
Alignment:
| Q |
71 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
170 |
Q |
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| T |
39950937 |
acgatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaag |
39950838 |
T |
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| Q |
171 |
aaggttatgctgatgttcataagtgtaggcacgagcatagat-aatcttgtgcattcacatacagaaactggtaagcagtcagca |
254 |
Q |
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| T |
39950837 |
aaggttatgctgatgttcataagtgtaggcacgagcatagataaatcttgtgcattcacatacagaaactggtaagcagtcagca |
39950753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 39951291 - 39951238
Alignment:
| Q |
15 |
aagaaatacgcatcaattcttactgtaaaagccacagctaaaaacaaaagctat |
68 |
Q |
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| T |
39951291 |
aagaaatgcgcatcaagtcttactgtaaaagccacagctaaaaacaaaagctat |
39951238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 46402298 - 46402117
Alignment:
| Q |
73 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
172 |
Q |
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| T |
46402298 |
gatattgcaacggaaggaaactctataccactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaaggagaa |
46402199 |
T |
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| Q |
173 |
ggttatgctgatgttcataagtgtaggcacgagcatagataatcttgtgcattcacatacagaaactggtaagcagtcagca |
254 |
Q |
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| T |
46402198 |
ggttatactgatgctcataagtgtaggcacgggcatagataatcttgtgcagtcacaaacagaaattggtaagcaatcagca |
46402117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 17113678 - 17113787
Alignment:
| Q |
101 |
tactctatgagtaacatctcaccagaagtctgaatggttcttcagccat--tttagcagccaaaccaagaagaaggttatgctgatgttcataagtgtag |
198 |
Q |
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| T |
17113678 |
tactccattagtaatatctcaccagaaatctgaatggttctttaaacattatatagcacccaaaccaaggagaaggttatattgatgctcataagtttag |
17113777 |
T |
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| Q |
199 |
gcacgagcat |
208 |
Q |
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| T |
17113778 |
gcacgagcat |
17113787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 27743521 - 27743706
Alignment:
| Q |
73 |
gatattgcaacggaaggcaactctatactactctatgagtaacatctcaccagaagtctgaatggttcttcagccattttagcagccaaaccaagaagaa |
172 |
Q |
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||||||||||| |||| |||||||| |||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27743521 |
gatattgcaacagaagataactctattctactcgatcagtaacatctcaccagaagtatgaatggttcttcagacattttagcagccaaaccaaggagaa |
27743620 |
T |
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| Q |
173 |
ggttatg----ctgatgttcataagtgtaggca-cgagcatagataatcttgtgcattcacatacagaaactggtaagcagtcagca |
254 |
Q |
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| T |
27743621 |
ggttatatatactgctgctcataagtgtaggcaccgagcatagatgctcttgtgcagtcaaaaacagaaa-tagtaagcaatcagca |
27743706 |
T |
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