View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_1 (Length: 824)
Name: NF11882_high_1
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 299 - 808
Target Start/End: Complemental strand, 39991695 - 39991190
Alignment:
| Q |
299 |
gtttaccaattatcaccaatatagttaaatttaacttttttcacaaaagggtacctttctaacttcataattcacttatatgagaaaagaactctgcaaa |
398 |
Q |
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| T |
39991695 |
gtttaccaattatcaccaatatagttaaatttaacttttttcacaaaagggtaccttactaacttcataattcactcatatgagaaaagaactctgcaaa |
39991596 |
T |
|
| Q |
399 |
agcaatgannnnnnnnatagggtttggaaatggaaattataaacattaattgaacaaaaattataccttttctttctgcatttcttttgcaacaataaca |
498 |
Q |
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| T |
39991595 |
agcaatgattttttttatagggtttggaaatggaaattataaacattaattgaacaaaaattataccttttctttctgcatttcttttgcaacaataaca |
39991496 |
T |
|
| Q |
499 |
cctaaaacaacaaaatctccaacagaaaaaatagtcttgttaagtcaaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggtt |
598 |
Q |
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| T |
39991495 |
cctaaaacaacaaaatctccaacagaaaaaatagtcttgttaagtcaaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggtt |
39991396 |
T |
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| Q |
599 |
accaaagtaaacccttcaaggaacaaaggatccaaagataaccccacatgcacccttgttagaattccaacaccaaccgcaccaaactgcaaagatagtc |
698 |
Q |
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| T |
39991395 |
accaaagtaaacccttcaaggaacaaaggatccaaagataaccccacatgcacccttgttagaattccaacaccaaccgcaccaaactgcagagagagtc |
39991296 |
T |
|
| Q |
699 |
acaacccacgattttgaatggacaaagctccaaccttgtgacaaaagctcactcatacataatccttcctaccaaactagcttatgttaaaaagcacgtt |
798 |
Q |
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| T |
39991295 |
acaacccacgattttgaatggacaaagctccaaccttgtgacaaaagcttact----cgtaatccttcctaccaaactagcttatgttaaaaagcacgtt |
39991200 |
T |
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| Q |
799 |
tgttaatgtt |
808 |
Q |
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| T |
39991199 |
tgttaatgtt |
39991190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39991993 - 39991774
Alignment:
| Q |
1 |
aaccctaagcaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaaatatgctgnnnnnnnt |
100 |
Q |
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| T |
39991993 |
aaccctaagaaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaaatatgctgaaaaaa-t |
39991895 |
T |
|
| Q |
101 |
aagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgttacattaaacaaaaccaactcactcata |
200 |
Q |
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| T |
39991894 |
aagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgtgacaataaacaaaaccaactcactcata |
39991795 |
T |
|
| Q |
201 |
agattgaatgaaaattctagg |
221 |
Q |
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| T |
39991794 |
agattgaatgaaaattctagg |
39991774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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