View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_11 (Length: 394)
Name: NF11882_high_11
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 4411524 - 4411637
Alignment:
| Q |
263 |
gcttaatgtgataaaatgtaaaatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
362 |
Q |
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| T |
4411524 |
gcttaatgtgataaaatgtataatttcaagatttgaacacaattaatggacaattttttccaattttgagtatatgttagaatttcaatctctttgtata |
4411623 |
T |
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| Q |
363 |
aataagtacacaca |
376 |
Q |
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| T |
4411624 |
aataagtacacaca |
4411637 |
T |
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Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 4411067 - 4411183
Alignment:
| Q |
17 |
acaaacgactaactgtttgtcttatagtttgttgctattaaagacaacagagcacataggcaccgttgaatttatgacgcgagaataatgaatctgagac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
4411067 |
acaaacgactaactgtttgtcttatagtttgttgctgttaaagacaacagagcacataggcactgttgaatttatgacgtgagaataatgaatctgagac |
4411166 |
T |
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| Q |
117 |
cctgtgatgagtacaaa |
133 |
Q |
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| T |
4411167 |
cttgtgatgagtacaaa |
4411183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 4411388 - 4411485
Alignment:
| Q |
127 |
gtacaaatcaatcaattattaattataaatcaataaatatattttttatagattaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
224 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4411388 |
gtaccaatcaatcaattattaattataaatcaataaatatattttttatagagtaagtttattctttaactagtaaaaaatagtcaatatctttaaac |
4411485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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