View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_12 (Length: 387)
Name: NF11882_high_12
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 38875474 - 38875829
Alignment:
| Q |
18 |
ataagaaggcaaatagaaagtagcaactaatactactcaactgcaaattttcctttcaccattttaacatagtttttatttaactaaatcatataaaatg |
117 |
Q |
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| T |
38875474 |
ataagaaggcaaatagaaagtagcaactaatactactcaactgcaaattttcctttcaccattttaacatagtttttatttaactaaatcatataaa-tg |
38875572 |
T |
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| Q |
118 |
aaatagccttagaacatccaagttgatctaaccaaccatttcaatactactaaaaatcgatgtcaacgatcaaaagtggagcattcaattaatattacat |
217 |
Q |
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| T |
38875573 |
aaatagccttagaacatccaagttgatctaaccaaccatttcaatactactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacat |
38875672 |
T |
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| Q |
218 |
cctttcacacaacaagttttgtatgaaattcgttcatcgcacaccacttttaaaccaaaaagtttgacaagataaaccttcattaaaacatttctaaatt |
317 |
Q |
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| T |
38875673 |
cctttcacacaacaagttttgtatcaaattcgttcatcgcacaccacttttaaaccaaaaagtttgacaagataaaccttcattaaaacatttctaaata |
38875772 |
T |
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| Q |
318 |
gtaaaaattaattaaattaatcctaagatttgttacctaacgttatcagcatagtct |
374 |
Q |
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| T |
38875773 |
gtaaaaattaattaaattaatcctaagatttattacctaacattatcagcatagtct |
38875829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 9821249 - 9821351
Alignment:
| Q |
163 |
actactaaaaatcgatgtcaacgatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatgaaattcgttcatcgcacacc |
262 |
Q |
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| T |
9821249 |
actactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatcgcacgcc |
9821348 |
T |
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| Q |
263 |
act |
265 |
Q |
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||| |
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| T |
9821349 |
act |
9821351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 9821352 - 9821427
Alignment:
| Q |
295 |
cttcattaaaacatttctaaattgtaaaaattaattaaattaatcctaagatttgttacctaacgttatcagcata |
370 |
Q |
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|||||||||||| |||||| || ||| | | |||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
9821352 |
cttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacattatctgcata |
9821427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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