View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11882_high_16 (Length: 341)
Name: NF11882_high_16
Description: NF11882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11882_high_16 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 5722677 - 5722364
Alignment:
| Q |
18 |
tatcctatctcatttttaccttttacttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggttt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5722677 |
tatcctatctcatttttaccttttactaaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggttt |
5722578 |
T |
|
| Q |
118 |
gtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5722577 |
gtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaa |
5722478 |
T |
|
| Q |
218 |
aggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttcctctttataatatattattaccgttnnnnnnntgcaggaagatctttact |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5722477 |
aggtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttcctctttataatatattattaccgttaaaaaaatgcaggaagatctttact |
5722378 |
T |
|
| Q |
318 |
atccacatcctttg |
331 |
Q |
| |
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|||| ||||||||| |
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| T |
5722377 |
atccccatcctttg |
5722364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 5692335 - 5692077
Alignment:
| Q |
20 |
tcctatctcatttttaccttttacttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgt |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692335 |
tcctatctcatttttaccttttactaaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgt |
5692236 |
T |
|
| Q |
120 |
cggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaag |
219 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| |
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| T |
5692235 |
cggtccaatcacaccattgaccttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaag |
5692136 |
T |
|
| Q |
220 |
gtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttcctctttataat |
278 |
Q |
| |
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|||||| ||||||||| ||||||||| |||| ||||||| |||| ||||||||||||| |
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| T |
5692135 |
gtgaggagtattatctctgattaaccacaatgtgtgtgtttacatatcctctttataat |
5692077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 5670566 - 5670314
Alignment:
| Q |
17 |
atatcctatctcatttttacctttta--cttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagagg |
114 |
Q |
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|||| |||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5670566 |
atattctatctcatttttaccttatatacaaaatacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagagg |
5670467 |
T |
|
| Q |
115 |
tttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtg |
214 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||| |
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| T |
5670466 |
tttgtcggtccaataacaccactcatcttaaagttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtg |
5670367 |
T |
|
| Q |
215 |
caaaggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttc |
267 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5670366 |
caaaggtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttc |
5670314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 5670168 - 5670100
Alignment:
| Q |
263 |
atttcctctttataatatattattaccgttnnnnnnntgcaggaagatctttactatccacatcctttg |
331 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
5670168 |
atttcctctttataatatattattactgttaaaaaaatgcaggaagatctttactatccacatcctttg |
5670100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 12137849 - 12137677
Alignment:
| Q |
50 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
149 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| | |||||| |||| |
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| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
|
| Q |
150 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtg |
222 |
Q |
| |
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||||||||||||| ||| |||||||||| ||||||| ||| |||||| |||||||| ||||| |||||| |
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| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 103448 - 103622
Alignment:
| Q |
50 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
149 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| |||| |
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| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
|
| Q |
150 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
224 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||| || ||| ||| |||||||||||||||||||||||| |
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| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
103622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 164413 - 164547
Alignment:
| Q |
49 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
148 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
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| T |
164413 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
164512 |
T |
|
| Q |
149 |
tgagagaagaactccttacagaaccttatgaaaaa |
183 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |
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| T |
164513 |
tgagagaagaactccatacccaaccttatgaaaaa |
164547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 92853 - 92678
Alignment:
| Q |
50 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
149 |
Q |
| |
|
|||||| ||||| ||| ||||||||| |||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||| |
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|
| T |
92853 |
cagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagtt |
92754 |
T |
|
| Q |
150 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgagg |
225 |
Q |
| |
|
|||||||||||| | ||| ||||||||| |||||| ||| |||||| ||| ||||||||||||||||||||| |
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| T |
92753 |
gagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgagg |
92678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 13052380 - 13052547
Alignment:
| Q |
57 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaa |
156 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | |||||| ||||||||||| |
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| T |
13052380 |
aatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaa |
13052479 |
T |
|
| Q |
157 |
gaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
224 |
Q |
| |
|
||| | | || ||||||| |||||||||| ||| ||| |||||||| ||||||||||||||| |
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|
| T |
13052480 |
gaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgag |
13052547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
86 |
tgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacacca |
135 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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